RNA id: XM_039805680.1


Basic Information

Item Value
RNA id XM_039805680.1
length 1601
RNA type mRNA
GC content 0.51
exon number 5
gene id tubb5
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24302838 ~ 24307580 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCGGCACTTTCACATTAGTCTAGGGTCGGCTCCTCGCCCGCGAGTAACGCGTCTGCTCGTCGCTGTAAAACTTTAGCAACCACTATGAGGGAAATCGTGCACATCCAAGCTGGCCAGTGCGGCAACCAGATTGGTGCCAAGTTCTGGGAAGTCATCAGCGATGAGCACGGCATCGATCCCACAGGGACTTACCATGGAGACAGTGACCTGCAGCTGGACAGGATCAGTGTCTATTACAATGAGGCTACAGGAGGTAAATATGTGCCTCGAGCCATTCTGGTGGACTTGGAGCCTGGCACCATGGACTCTGTGAGGTCTGGACCCTTTGGGCAGATCTTCAGACCTGACAATTTTGTGTTCGGTCAGAGTGGTGCTGGAAACAACTGGGCCAAGGGTCACTACACAGAAGGAGCTGAGTTGGTGGACTCAGTCCTGGATGTGGTCCGCAAAGAGTCAGAGAGCTGTGACTGCCTGCAGGGCTTCCAGCTCACCCACTCTCTTGGTGGCGGAACTGGATCCGGTATGGGAACCCTGCTCATCAGCAAGATCCGTGAGGAGTACCCCGACCGTATCATGAACACTTTCAGCGTGGTGCCTTCCCCCAAGGTGTCAGACACAGTGGTTGAGCCTTATAATGCAACCCTCTCAGTCCACCAGCTTGTAGAGAACACAGATGAAACCTACTGTATTGACAATGAGGCCCTGTATGACATCTGCTTCCGCACTCTCAAATTGACCACACCCACCTACGGAGACCTTAACCACCTTGTGTCCGCCACCATGAGTGGGGTCACCACCTGCCTGCGCTTTCCTGGTCAGCTCAATGCTGATCTACGCAAACTGGCTGTCAACATGGTGCCTTTCCCCCGTTTGCACTTCTTCATGCCTGGCTTCGCCCCACTGACCAGCAGAGGCAGCCAGCAGTACAGAGCCCTCACAGTTCCCGAGCTCACCCAGCAAGTGTTTGATGCCAAGAATATGATGGCTGCATGCGACCCACGTCACGGCCGCTATCTGACCGTCGCCGCCGTGTTCCGTGGGCGCATGTCCATGAAGGAAGTTGACGAGCAGATGCTCAACGTCCAGAACAAGAACAGCAGTTACTTTGTCGAATGGATCCCCAACAATGTGAAGACCGCCGTCTGTGACATTCCACCCCGTGGCCTCAAGATGGCTGTCACTTTCATTGGCAACAGCACAGCCATTCAGGAGCTGTTCAAGCGCATCTCAGAGCAGTTCACAGCCATGTTCCGCCGGAAGGCCTTCTTGCATTGGTACACAGGTGAAGGTATGGATGAGATGGAGTTCACTGAAGCAGAGAGCAACATGAATGATCTGGTGTCTGAGTACCAGCAGTACCAGGATGCCACTGCTGAAGAAGAGGGTGAATTTGAGGAGGAGGCTGAAGATGATGCTTAAAGATAAAGATGTGAAGGTCAAGACATCAATGCCAAAACGAAAAATAATCAGAAAAGAACAACCACAAAGGTAACCAAGGAAAAAGCTTAGTGTCTGAAGCATTGCTAGAATTAAATTTTAGCATACATTAGATATCTCTTGTTAGTTACtgcaaataaaattgaaaataaaattgatATT

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07375 TUBB; tubulin beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101174 lncRNA upstream 6115 24295838 ~ 24296723 (+) True G75622
TU101154 lncRNA upstream 86269 24216140 ~ 24216569 (+) True G75611
TU101108 lncRNA upstream 177757 24122027 ~ 24125081 (+) True G75583
TU101106 lncRNA upstream 180829 24119317 ~ 24122009 (+) True G75582
TU101028 lncRNA upstream 229194 24073389 ~ 24073644 (+) False lpcat3
XR_005639733.1 lncRNA downstream 161254 24468834 ~ 24488842 (+) False LOC120562289
XR_005639731.1 lncRNA downstream 161255 24468835 ~ 24480123 (+) True LOC120562289
XR_005639732.1 lncRNA downstream 161255 24468835 ~ 24472842 (+) False LOC120562289
TU101229 lncRNA downstream 213185 24520765 ~ 24534169 (+) True dedd1
TU101237 lncRNA downstream 213185 24520765 ~ 24534169 (+) False dedd1
XM_039805676.1 mRNA upstream 10352 24253203 ~ 24292486 (+) True ddr1
XM_039805677.1 mRNA upstream 10352 24253203 ~ 24292486 (+) False ddr1
XM_039805679.1 mRNA upstream 10352 24253203 ~ 24292486 (+) False ddr1
XM_039805678.1 mRNA upstream 10352 24253203 ~ 24292486 (+) False ddr1
XM_039805108.1 mRNA upstream 59284 24234148 ~ 24243554 (+) True gnl1
XM_039805672.1 mRNA downstream 1469 24309049 ~ 24320416 (+) False mdc1
XM_039805674.1 mRNA downstream 1563 24309143 ~ 24320416 (+) False mdc1
XM_039805673.1 mRNA downstream 1585 24309165 ~ 24320416 (+) True mdc1
XM_039805675.1 mRNA downstream 1808 24309388 ~ 24319015 (+) False mdc1
XM_039805682.1 mRNA downstream 13722 24321302 ~ 24335701 (+) True si:dkeyp-77h1.4
XR_005639925.1 other upstream 248510 24054272 ~ 24054328 (+) True LOC120563208
TU101013 other upstream 270393 24031390 ~ 24032445 (+) False atn1
TU100879 other upstream 423423 23873916 ~ 23879415 (+) False LOC120563047
XR_005639922.1 other upstream 534261 23768233 ~ 23768577 (+) False LOC120563204
XR_005639924.1 other upstream 535371 23767185 ~ 23767467 (+) True LOC120563206
TU101207 other downstream 127559 24435139 ~ 24436770 (+) False G75644
TU101208 other downstream 127559 24435139 ~ 24436819 (+) True G75644
TU101448 other downstream 607674 24915254 ~ 24989119 (+) False LOC120561858
TU101741 other downstream 1184234 25491814 ~ 25493157 (+) False apoc1
TU101746 other downstream 1195020 25502600 ~ 25504052 (+) True apoc2

Expression Profile