RNA id: XM_039805700.1



Basic Information


Item Value
RNA id XM_039805700.1
length 2021
RNA type mRNA
GC content 0.43
exon number 3
gene id arl4aa
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 31500830 ~ 31504662 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


tctctctctcacacacacacacacacacacacactctcgttCACTCTCTCCACCATGCTCCAAACACACAAACGGACAGAAAAGCGAAAACACGCCGACTCTCCGAGCTGACTATACGTATTCGTGTGGCGTTGGTCCAGACTGACAGCAGTGCCATCAGCGGTAGACCCACACTGGGACATAGAGGACAGACAGGGAGGGTGTCTCCGCTTTTGAGGAAGGATTTTCGATCGTTGTTGCCGACATACGAGGCGGAAATACACAGTTATTGCTGCGATTGTTTTGGAATATAATCAGCTCTAAGGATTATTGCTGGACAATTGGATACAATCTCCCAAATCATCAGTCCTTCCTCATGAAGTAAGATGGGGAATGGATTGTCAGAACAACCTAGCTTCCTCTCCAACGTCCCGTTCTTCCAGTCGTTTCACATCGCCATCCTCGGCCTGGACTCCGCAGGGAAGACCACCGTTCTGTACAGACTGCAGTTCAATGAGTTTGTGAACACGGTGCCCACCAAAGGTTTTAACGCGGAGAAGGTGAAAGTGTCTCTGGGCAGCCACAGGACtgtgacgttccacttctgggacgTCGGTGGCCAGGAAAAGCTACGCCCCCTGTGGAAGTCGTACACACGATGCACGGACGGCATCATATTTGTGGTGGACTCCGTGGATGCAGAGCGCATGGAGGAGGCCAAGACTGAGCTCCACAAAATCGCCAAGACCACTGAAAACCAGGGGGTACCCCTGCTGGTGGTAGCCAACAAACAGGACTTGAGACACTCTTTGGGACTTGCTGAAATTGAGAAAGTTCTGTCACTGAAAGAACTTGGCCCTGCAACTCCCTGGCACCTGCAGCCAACCTGCGCTATCATAGGCGATGGACTCCGGGAGGGTCTGGACAGACTCCATGACATGATCCTTAAAAGGAGAAAGGTGCTGCGGCAGCAGAAGAAAAAGAGATAAACCATGTCATGAGAAAGACTTGTCTGCTGTTATATGTGAAGGAAACAAAGAGTATTCTCCTCCTGGGTGGATAAAGGCATCCACTGCAGGTCCACATTCAAAATGCTGAGTTTTATCAGTCCAAAATTTAGGTTTTAGGATTCCCTGTCTTGGTCTTGTGATGATGCTGTTGAGCAGGAAGTGAGACTTAAAGAAATACAGTATGAAGATGAGAAAGTTTCAGACATGTTTGGATATGATTATAAAGAGTTTATATGGATTTAAAAGCACTGAGGGTTTGGGGTCTGGAAGGGTGGTGGTGAGAACTTAAGGATGCTGTATGTTTCATGAATGGCTGTTCCAAACAATATTACcaaaaataatttaagaaaaggCTTTGACTAGTTGAAGGGTTATTTGGTAAATGATTGAACATTGTTACACCAGAGGGGCAACAAAATATAcatcagttttattttactgttttatatgttgtatataaaGTGTTCATTTTTTACACTGGACTTTCTTTGTGAAAGAAAAGTATTATCATGCTTTACAGCATTATTATTATGGCTTGCTGTCTTATATctcattttttaaaaagcactttAGAGTATCACTTCTTCGTATgaagtttacagtttttttaaatagagcATATTGTGTTggattttacagaaatgtttggGCAAAATACAACAGATGCTACTGTAGTTGGTCCACATTGTCATTAGACAGGTTATGCATTAAGTTTTgcttaataaaacatatttagaGCAAGGTTGACGGTGAAATGGAGGGTGTTATTATGTCCACATTGTCGTTCTATTTGAAAAGCAAAGAAGTTCAGAATTGTAACCTGCGATTCCTTTAGCTTGTTTGAATCCGTAGGGAGCGACAAAAAACAGGCAGTGTGTGAAAACATCTGTTAAGTGTGCCCTTTAACCGTGCACCAAACCACCAGTTTCCCCAGAACTAGTTCTGTCATGTGAATGTGATACAAGGGGTttcctaaaaacaaaaacaaaatgcctGCTCAGTCAACCTATGCTCTAATTATCACTTTGGAAA

Function


GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07945 ARL4; ADP-ribosylation factor-like protein 4

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
XR_005639812.1 lncRNA upstream 484400 31015133 ~ 31016447 (+) True LOC120562710
XR_005639811.1 lncRNA upstream 512114 30978327 ~ 30988733 (+) True LOC120562708
TU103534 lncRNA upstream 523766 30976741 ~ 30977081 (+) True G77399
TU103458 lncRNA upstream 769247 30687338 ~ 30731600 (+) False rab5ab
TU103334 lncRNA upstream 1098143 30398276 ~ 30402704 (+) True G77260
TU103737 lncRNA downstream 9474 31514136 ~ 31514561 (+) True G77555
TU103736 lncRNA downstream 13101 31517763 ~ 31518618 (+) True G77554
TU103740 lncRNA downstream 20521 31525183 ~ 31525583 (+) True G77558
TU103778 lncRNA downstream 106396 31611058 ~ 31611311 (+) True G77591
TU103779 lncRNA downstream 107819 31612481 ~ 31614315 (+) True G77592
XM_039806157.1 mRNA upstream 2361 31497043 ~ 31498486 (+) True si:dkey-30e9.6
XM_039805699.1 mRNA upstream 51396 31444788 ~ 31449451 (+) True vwde
XM_039805332.1 mRNA upstream 65790 31426759 ~ 31435057 (+) True tmem106ba
XM_039805384.1 mRNA upstream 299587 31176838 ~ 31201260 (+) False LOC120561996
XM_039806455.1 mRNA downstream 413084 31917746 ~ 31932047 (+) True LOC120562640
XM_039805808.1 mRNA downstream 438749 31943411 ~ 31947773 (+) True pkdc
XM_039805809.1 mRNA downstream 438749 31943411 ~ 31947773 (+) False pkdc
XM_039805810.1 mRNA downstream 444960 31949622 ~ 31959398 (+) True herpud2
XM_039806046.1 mRNA downstream 585496 32090158 ~ 32124377 (+) True dpy19l1l
TU103600 other upstream 364701 31134829 ~ 31136146 (+) True G77447
TU103301 other upstream 1376209 30123702 ~ 30124638 (+) True G77239
TU103032 other upstream 2088434 29404008 ~ 29412413 (+) False G77028
TU103024 other upstream 2110955 29384135 ~ 29389892 (+) True LOC120562177
TU103005 other upstream 2170589 29328789 ~ 29330258 (+) True G77009
TU103881 other downstream 471656 31976318 ~ 31979909 (+) True G77682
XR_005639638.1 other downstream 900471 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other downstream 900471 32405133 ~ 32421472 (+) False LOC120561717
TU104140 other downstream 1595751 33100413 ~ 33101534 (+) True G77888
unassigned_transcript_355 other downstream 2121269 33625931 ~ 33626002 (+) True trnap-agg_3

Expression Profile


XM_039805700.1 Expression in all Baseline Samples

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XM_039805700.1 Expression in each Bioproject

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XM_039805700.1 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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