RNA id: XM_039805707.1


Basic Information

Item Value
RNA id XM_039805707.1
length 2495
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC120562165
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 16845953 ~ 16850232 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCGAGTCTTGAGCCAGAACGACAAAGAGATCACAACCTTCTGCTACACCACAGCCAGAGAGGAGGGACGATTCAACCCCAAACCAAAGGACTCAAATCAGCTCCAATAACGACAACTAAACACTTTTTAGACTGCAGATATTTTTGATTCTGCTCTACTTAACAGGAAGATGACCAATCTGTCACAGAGAGCTCTTTTTGTCTTCTTTACAGCACAGgTGTTTACTCAAGTCTGGTCACAGGTGTGTCCTCGGAGATGCCAGTGCCCTAAGGAGCCCCCCATGTGTCTCCCTGGGGTGCCTTTGATCCTGGATGACTGCGCCTGCTGCCTGGTGTGTGCCCGTCAGAAAGGGCAGGTCTGCTCTGAAGCGAATCCCTGTGACACACGCAAAGGGCTGCAATGTGAATACACCGCTGACGTCCACAAGAGGACTGGTATCTGTGCCGCTCATGAaggagatgtgtgtgttttggacgGTTCTGTCTATCAGAACGGCCAGACCTTCTTTCCCAGCTGTAAGTACCAGTGTATGTGCCGTGATGGGCAGATCGCCTGTGTGCCGCGCTGCACCGTGGATGTGATGCTGCCCGGGCCGGACTGCCCCATGCCACGCAGGGTCCTGGTGCCTGGAGAGTGCTGCGAGAAGTGGGTGTGTGAGCCCCAGGGCGAGGCCAGTGCACTGGGCGGCTTTGCCATGGCGGCCTATCGTCAGGAGGAAACAGTGAGATTTGACAACTGGGACCCTAGCCTGAACTGCATTGAGCAGACCACAGAGTGGGGCGCCTGCTCTCAAACCTGCGGCATGGGGGTGTCCACCAGGGTCACTAATAAGAATCGCCGGTGTGAGATGATGAAGCAGAGCCGACTGTGTATGATCAGACCCTGTGACGACCAGCAGGACCAGACGCAGCTCACACAGCTTGCACCGAAGCGAGGCAGTAAGTGTCAGAGGATGGTGAGGAGCGACACAACCGTCCACCTCTCCTATAAGAACTGCACCAGCGTCCAGGCCTACAAGCCTCGCTACTGTGGCTCCTGCACAGACGGCCGCTGCTGTACCCCCCACAGAACCAAGACTGCTGTGGTGGAGTTCCAGTGTGCCAACGGTAAAACCACCAGGAAACCAGTCATGGCCATCCTGACTTGTGCCTGCCACAGCCATTGCCCCCGAGACAATGCTGTGTGGCAGCCATCAGAGCTGGGATACAGTGGTTATAGGTCATAAAGTCACTCTTGAGGTCCAAGAGCATTCTCTTTacttaaaaaacataaaaacatgagtTGCATTGACTCAAAATTTTAGATTAAAACAAGACTGTCTGCGACATATCCACAgtgaaaataatgtctgctTATTATGGTTCAGAATCATACTTGTATTCGTAAAATGAGAATCCTCTTTTCTTGTTGAGATCGTAGAGAACTAAAtagctctctatctctctctcctggaGAGCGATTTAGTTTTGTAACATCCTGTGGACAAATAAGTGTCATCTTCACTATGTTAAGTAGAATCAAAGCACTTAAACCTTGTGATATATTGATTCTCTCCATCCAACCATTCACAACAGACGGTTGGACAGTTGTCTGTAGGTGCTCTTACATTGTGAAGGTCAACATAAAACAGCCTCTTTTCAAGAGGTCAAATAGTATGAAGGTGTACAGTTACAGGGTAGTGCAGATATACAGGATAGTCATGGTTGCTTGAAGCCTTCCAACCGGACTGTTTGATTGACAGTCAGGTCGGCCAATCAGGAAACAAGACAAAGAGCAAGAAACCACAGTTGGgttttttaaaagcttcagCAATGTAAAGGAGCAAGTAGGTCCTCTTTCAGAATGAATTAAAACACCTACTGTACTCTGACACTTTGACACCTTAATctagaaaaaaaactataataaGAATACTGCAATCCCATTACTTTcacattgataaaaaaaaaagaagaaagagaagcatGAGGGAAAGAAAGGATTATAGGGTGAGCTGTTACCTTTTAGTGGCACTGCCATGGACATGTTTCAACTATGggacacattttttaaataactggACTGTGTGCTTTGACCTGGTCCAAACCAAGGGCTCAACCTATGAAAGAGAGGTCACTGTAGTGACTTAGTGTCATTTCTAACATCCGCCTGAAATCTAACTCCCGTTGTAAAATGTGTAATGTCTATGTTCTCGTCAATAAATGCaaatgtatgttgttgtttttttaggtaTAGAAGGGATTTTATTTGTTGAAGGTAGTGCACATAACAGCTATTTTTATAATGACAAAAGTTTTGTAAATACTTGCTGTATAGCTTGTTTGACTGAGTGTGTATCAAATACACAGCTTTAATTGGTAACGATGTAAACATGAATTGTATATGTTGATATGTGGTATTGTTTTGCTTACTACTTGAATTATACTTCACACTGCTTGTTGTAGCTGTCTAAATAATAATGCAAAACTCAacataaatgtgtatttttttgta

Function

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function

KEGG:

id description
K23571 NOV, CCN3, IGFBP9; insulin-like growth factor-binding protein 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97304 lncRNA upstream 114909 16730837 ~ 16731044 (+) True G72852
TU97233 lncRNA upstream 351378 16494237 ~ 16494575 (+) True G72801
TU97229 lncRNA upstream 355572 16489593 ~ 16490381 (+) True G72798
TU97228 lncRNA upstream 360034 16485713 ~ 16485919 (+) True G72797
TU97227 lncRNA upstream 363455 16482255 ~ 16482498 (+) True G72796
TU97321 lncRNA downstream 109556 16959788 ~ 16962840 (+) True G72859
TU97344 lncRNA downstream 141484 16991716 ~ 16991989 (+) True G72879
TU97325 lncRNA downstream 215357 17065589 ~ 17065911 (+) True G72862
TU97549 lncRNA downstream 542036 17392268 ~ 17403627 (+) True G73019
TU97564 lncRNA downstream 577596 17427828 ~ 17463027 (+) True G73027
XM_039807231.1 mRNA upstream 14790 16816442 ~ 16831163 (+) True LOC120563118
XM_039805984.1 mRNA upstream 29696 16732632 ~ 16816257 (+) False LOC120562315
XM_039805978.1 mRNA upstream 29696 16732633 ~ 16816257 (+) True LOC120562315
XM_039805979.1 mRNA upstream 29696 16732633 ~ 16816257 (+) False LOC120562315
XM_039805981.1 mRNA upstream 33200 16732633 ~ 16812753 (+) False LOC120562315
XM_039805708.1 mRNA downstream 7791 16858023 ~ 16897965 (+) True sntb1
XM_039804925.1 mRNA downstream 134379 16984611 ~ 16990597 (+) True LOC120561714
XM_039804920.1 mRNA downstream 145077 16995309 ~ 17065077 (+) True LOC120561713
XM_039804921.1 mRNA downstream 145077 16995309 ~ 17065077 (+) False LOC120561713
XM_039804923.1 mRNA downstream 145077 16995309 ~ 17065077 (+) False LOC120561713
TU97163 other upstream 773752 16018359 ~ 16072201 (+) True G72750
TU97064 other upstream 1290001 15553464 ~ 15555952 (+) False irx4a
unassigned_transcript_349 other upstream 1819300 15026582 ~ 15026653 (+) True trnae-cuc_16
TU96917 other upstream 2215490 14626478 ~ 14630463 (+) False LOC120561718
TU96848 other upstream 2419773 14425794 ~ 14426180 (+) True G72506
unassigned_transcript_351 other downstream 518471 17368703 ~ 17368775 (+) True trnar-acg_16
TU97574 other downstream 599353 17449585 ~ 17452568 (+) True G73031
XR_005639656.1 other downstream 606411 17456643 ~ 17460327 (+) False ubxn11
TU97725 other downstream 795281 17645513 ~ 17647186 (+) True G73123
TU97779 other downstream 900724 17750956 ~ 17779130 (+) False paqr7b

Expression Profile