RNA id: XM_039805738.1


Basic Information

Item Value
RNA id XM_039805738.1
length 2197
RNA type mRNA
GC content 0.47
exon number 7
gene id rnf41l
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21235187 ~ 21240428 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGAGTCTAACGGAAATGGAAGTCCATAGGATATAAAGGGACTGGGATGAGTCCAGAGCTGCCTGCCTGTGTCCTGAACCCTGGTTGTCAGGGATACCTCTCCATGGAGACACACTCCCAAAGGTAGGGGAGGGCTTTAAGGGAAAGGAGACCCTCACCTTGATGGAGCAACAAGTCAAGAGAAAGGATGAAGAAGGAAAGActgttgtagtagtagtagtagtagtagtagtagtagtagtagtgcagAGATAAGAGGGAAGGTCACCTGTGTGGGACCAAGAGAAGGGGAAATCAACAGAAGGAAAGAAGAACAAAGAGTTGGATGAAGTGAGATCTGTTTTTGTCAGGATGGGCTATGATCTGGAGAGGtttgtgggctatgtgaatgaGGGtcttctgtgctgtgtgtgtcgaGACGTGTTGGAGCGCCCCCTCCAGGCGCCCTGCGAACATGCCTACTGCAGCGCCTGCATCAGCAGCTGGCTGGTCCATCATCACTCCTGTCCCGAGGACAGACTCCCACTGGATTTGGGCAGTCTCAAACCACTGTACAGGTACATGCGTAATGACCTGAACCGCCTGCAGATACGTTGTGTGAATGCAGGGCAGGGTTGTGAGGTGGTCTGCTGCCTGGAGAACCTGCACACACATGAGGATGAGTGCGAGTTTGCCTTCATTTCCTGCTCTAACACAGGTTGTCCTGTGCAGGTAGAGAGGCGGGGTTTGGAGGCTCATCTGTCGGAATGTAACTTCCGCAGCAGGGAGTGTCCCAACGGCTGTGGCCACACCCTTCTCTCCATCGACCAATCACAGCATAACTGTGTAGCAGAGGAGCTGCGCACAGAAGTGGAGATGCTCAGGGCAGAGATGCTGTGTaaggtggaggaggtgaaacgAGAGATGGAGTCTCGGTTGGATTCACAGAGGAGACACATGGTGCAGAAAGAGTCGCAACTGAAGAACGACGTGGAGGAGCTCAAGGATCAGTTGTCCCGTGTGGTGTGTGACATGCGAGCCCTGTTAGGAGCAGAGCGTCTGAGAAGACAGGAGCTGGCAGAAGCAGAGCTGGAGAAGAGGGAGCTGTTGGAGCTCCTCAGAGATCTGCAGCCAACCAGGAGCCAGCATCCTGTCGAACAGGCATCCAGTGACCAGCATCAGGGAGCCCAGCAGCAAACATCTGGATGGGAGCTGACAAGACACCAGCAGAGGGAAGCATCTTTACACGCCTCCAGACTGTCACTACATTCAGCTCAGGCCATAAATATATCAGGACCACCTCTATCACCTCAGCTGGGAGAGGGGACGCGCAAGGGTGGTACCAGGAGCCTGACTCTAGACTGCATCAAGAGGAAGAGCCGGGAGGTGACGGTCATCTGAGTAGACTGGACTGGTGGCAGATTAGCCAAACCAGAAATgataaaatcattatttttgtaatatttggCTAACAGTTTAGTAATGACAATATAGTGTGTGTACAGTACGCTATGGAATGATGCGTTGTTATAGTCTGCTGTGGAACGAACCATATGTTGTTTGAAAGGTGTTTTTGTGTAATTCTACAAACTAACTTGATCTTTTGATTGTAGGTGAGAAAGTGAATAGACATCAATTTATTTTGTGGACTCACCAGTGATCATTCCTGCAAACGGATCATTGTGTAATGTCTGTTATTTTTTATCTCAGGTTTTAATTATACACAGTTACTTCAAGTGATTTTCTTGTTCTCAGGACCAAATTATTCAGTTTCCTCAGTAGTGATCCATCTGATGCAGTATTTTCTGCTTTGAAAACGTTTGTTAAATGGTTCTTGAGTGTCCTGCAAGAACTTGGTTACGCGAGAACTTCTAAAATTATTTTAAGTCTAACCTAAAATGTTGAGTCACATTGTTGACTCACAATGTGTAATATTTCACAGCTTTGTCAATCTAAGGTATGAAAAACAAAGGCATACCAAGCAAATCTTGGAGAACAGCTATGTTACAGTTTGTGTTTTGGCATCAAGACTAAAGGACTGCATGTAGCACTACCAATATGATCTCTGAAATTAATATGGTAACTTGGTGTCGCAGTTGGCAAAGGCATGTATTTTGGGTTTAACTTGTGTTGTACATTCTGCACCTTTCTGTCTcacaaatatttcattttaaccACTTTAACTCATTAAATTCAAGGAACTATTCCTAAATGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99280 lncRNA upstream 12800 21076311 ~ 21222895 (+) True G74230
TU99289 lncRNA upstream 78783 21101170 ~ 21156912 (+) True G74234
TU99287 lncRNA upstream 83183 21150389 ~ 21152512 (+) True G74233
TU99243 lncRNA upstream 341753 20893139 ~ 20893942 (+) True G74207
TU99244 lncRNA upstream 343040 20891684 ~ 20892655 (+) True G74208
TU99348 lncRNA downstream 2801 21243229 ~ 21243567 (+) True G74274
TU99365 lncRNA downstream 48743 21289171 ~ 21289375 (+) True G74286
TU99366 lncRNA downstream 49125 21289553 ~ 21290314 (+) True G74287
TU99367 lncRNA downstream 50614 21291042 ~ 21292380 (+) True G74288
TU99494 lncRNA downstream 94241 21334669 ~ 21335693 (+) False LOC120563169
XM_039807088.1 mRNA upstream 44875 21183951 ~ 21190820 (+) True pdp1
XM_039807238.1 mRNA upstream 52347 21172523 ~ 21183348 (+) True tmem67
XM_039807239.1 mRNA upstream 52347 21172524 ~ 21183348 (+) False tmem67
XM_039807240.1 mRNA upstream 52347 21172524 ~ 21183348 (+) False tmem67
XM_039806828.1 mRNA upstream 68009 21161676 ~ 21167686 (+) False si:ch211-197h24.6
XM_039806855.1 mRNA downstream 16297 21256725 ~ 21268854 (+) True esrp1
XM_039806856.1 mRNA downstream 16297 21256725 ~ 21268854 (+) False esrp1
XM_039806857.1 mRNA downstream 16297 21256725 ~ 21267585 (+) False esrp1
XM_039804883.1 mRNA downstream 68450 21308878 ~ 21312066 (+) True sgk2b
XM_039804874.1 mRNA downstream 74641 21315069 ~ 21329447 (+) False l3mbtl1b
TU99269 other upstream 224324 21008033 ~ 21011371 (+) False sec61b
TU98645 other upstream 1586184 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 2076700 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 2076700 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 2489020 18744662 ~ 18746675 (+) True LOC120562824
TU99513 other downstream 162699 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 358627 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 529120 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 892150 22132578 ~ 22136234 (+) True LOC120561539
TU99946 other downstream 897137 22137565 ~ 22139223 (+) False LOC120561537

Expression Profile