RNA id: XM_039805768.1


Basic Information

Item Value
RNA id XM_039805768.1
length 3669
RNA type mRNA
GC content 0.47
exon number 17
gene id LOC120562193
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 32853357 ~ 32888350 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGAGCGATGCTGTGGCTGCTGGCTGCCACAGTTGGAGAACAGGATACCACAGCACTGAGGGACTGCAGtgatattttaaatttctgacCCGCACAAAGAAGAGTCCAACCTGTATTTAGGATCCTGCATGTCATTTCTGCTTAGCTAAGCAGTTAACTTCGGTATCAACCTGGAGGTCTCCAACCCTCTTAAGATGTACGGCCTGTACTTAGAAGCAGTGAACGATTACATAAACGAATCGTACGGAGAAGATGTGTGGAGATTGATCGAGAACCGAGCAGAGATACCCCACCTCAAGTTTGTCCGACATCAGATGTACAaTGACAACCTGATTCTGCGGTTGGCAAAGGCAGCAGGCGAGGTTCTGGGAAAGACCCATGATGAGCTGATGTACGCCTTTGGGGTCTACATGGTCAAGAGGATTGGAAACTATGGATATGAGCGGATCCTAAAGGTTTTGGGGCGAAATGTGCGCGACTTCATCAATGAGCTGGACAACCTGCACGAGTACTTTCGCTTCTCCTTCCCCAAAGTGCAGCCGCCGAGCTTCTGCGTGGAGGAGGAGTGCGAGACGAGCCTCACGCTCCACTACCGCAGCACCCGCAAGGGCTTCACTCAGTTCGTCAAAGGGCAGCTCTCTCAAGTGGGACGCCAATTCTACAACACAGATATCGAAGTGGAAATCCTGTCTAAAGAGGAAACCGAGAAAATGACGTATGTGGTTTATAAGATGAACTTCGATAACGCCGCCTTCAAACACCGCATGCCCCAGCAGAAGACGGCGCCGAGCTACGAGAAGCTGCCAATGAAGCGAGGTATCTTCTTTGACATGTTCCCCTTCAGCGTCATCTTCCGCCGCGACATGACTATGTACCGCATCGGTGACGGACTCAAAGAGGTCTTCTCTGACCTCCAGGGCAAGAAAGTCAACGAGGAGTTCACTCTGATCAGACCCATGCTGGAGTTCAGCTGGGATAATATTTACACCCATTTGAACAATGTGTTTGAACTGCTGTCTAAAGCGGTGGTGGAGAGCAAGCAGAAGGTCAACATCCCCAAACTGAACAAGGAGGAGCcagaggagaaggaagagaaCGAGAAAGCGAAGAGGGAAGAAGAACGAGAGCCGAAGGCGGTGGAGGAGATGAAGGGCACAGACCAAGAGTACAGCAGCTCTCTCACCCAATACAACAGCTCTACAAACTCTGGAGGGGAAGACATTGAACTGCTGGCGTTCCAGACTATCACCGGAAAGTGTAGTGAGACCATCTTTGAAGACATGCGGGAGCCTCCAAAGAAGCCTCTCCACCTGAAGGGCCAGATGAAGTATGTCCCCCCGTGGGACTCCCTCATCTTCTTGGGGACACCCATTATAGAGACAGTGGAGGACATGATAAAGATGGGCGTGTACGTGAACGATCTCAACCTGCATGACTCCAGCAGAGAGCTGATTTTGGCCGGGACACAACAATCGGCTGAGCTGCAGCTGGCCCTCGACCAGGAGCAACAAAAATATGCCCAGCTGCAGGAAATCATCAAAAAGCTGGacgaagagaagaagagaggagattCTTTGCTGTACGCCATGATCCCTAAAGCTGTGGCCGACCGTCTCAGGAAAGGGATCACTGCTCTGGAGACATGCCAGGTCTTCCCAGATGTGACCATCCTGTTCAGCGACGTGGTCAAGTTTAACGAGATCTGCATCCACATCACACCCATGCAGGTGGTGGACATGCTCAATGAGATCTACATCGTCTTCGACACTCTCAGCGAGAAGCACAACGTCTACAAGGTGGAGACGATTCGTGATGCCTACATGGTGGTGGCGGGCGTGCCCAACAAGACCACCTTTCACGCGCACCATATCTGCGACATGGCACTGGACATGCTGAGCTCCATCGACCACCTCAAAGACCCCTCCACTGGAGATAACATCCAGATTAGAGTTGgtatTCACTCAGGTATGGTGGTGGCTGGCGTGGTGGGTCTGAAGATGCCTCGCTACTGCATGTTTGGCGACACTGTGAACACAGCCTCAAGGATGGAGAGCAATGGAGTGGGCATGCAGATACACATCAGTCAGACCACCAAAGACCACCTGGAACATGAGCCCTTTATCATTGAGGAGAGGGGCAAAATCTTTGTGAAGGGTAAAGGCTACATGAAGACCTACTGgctgaaaggaaagagagatCTATCGTTCAAGACCCCGGCAGAGCTGCGCTACAGCAGCGAACCGAAAGACTCGGACGACAAGAGCTCTAATGGTTCCACAAGCACCAATGCTAAACGCATGGGATCCAACCTCCACATCCCCGGCAACGAGGAGCAAGCTGAACGAAAGCCAAGCCCCAGCGACCTCCCACTGGACACCCTGCCCCCACCAGAGGCTGCTACCGAGACCCCCGCCGTTTCAACCGAGCcccaggagaaggagaaagcCAGAAAGACTAAGAACAACAAGGGGGCCAAGCTGGATGCGCCCCAAGCAAACAGCTTGCCGGAGTCTTCGCCGCCCGCGGACGGGCTGGAAAACCCGGGTCCTTTACTCAACATCAAGAGAAACAGCTTCAGACATCAGTACGCCAAGCTGCCCGCCAACCTGCCCATTCGCAGCGCCTCCTGTTCCATTCTGTGAGCAGATGATGGTAGTGAGATTACAAGACGACTCCAACATGTTACTAGGGTGTGATATATGTTTAAAATATCAATGAAGACAAAACAGGCATTTTAAGGTTTTCAACATACGGTTACTGATGATCTGCATTTGAAATTTTGAATGCCATATCATGCCAAGGGGTTGTGAAAGATACATGCTTTTGTGACATTTTGATTAAATTAAGAGCGAAACTTCAACTGAAGACCAACACTTAAACTGTTAAACATTTCCCAGTCAACAAGTCTACTTTTATTAAGGTAAAGTTTGTGCAAGATTTAAGGCTACACATGCTTGATATTTAGATACTGTTAACTTGACTGCTTATAAAAAGATGCTTTCAAAGTCACTGCATTTAAGTTGACTTAAAAATATATGAAATGGAGAAAACCTGCTTGCATGCTGTTTCATTGATTTCATGCTTTGAAGGATTTGCCTTGTATAGAAATTGGGAAAGTATTTTTAACACCCTGAATACATTTCACAACAGGTTTCACAAAATGCCTTCCTTATGTCGACTGTTTTAAAGAAAAGGAAGTACGATGGCCTCTACACACAAAACACGCAtgcacagagaaacagagaacttTAAAATTGTACTACAGGTATTGACGGCCATGACaattagtttattttatttgctaTTTGCTGTATTATTTTACAGGTCCACTTTACATTCATGAAGTCACTGCAACAGGAATCATGTTTGTTCAAATCTATATGGACAAAAACTTTGTTttagaaaaaataaagtaaGCCATTTCTCATTGGCCGGAGCTTCCACAGAAACAAAAACTACTTCTATGGATGCTTCATTTAATTCACTGAGAGTAGATCAAGaggttgtattttattttattgaaactAGGCACATCTAGTAATTCAGTAGACATTTTACCACATTGTCTAAAGGAGTTTTGGTTATATGTTCTGTATGTAACTGACTGCATTTGTCTTACTGTATGAtagtctttatttatataaaacgGTATGTACAGTCACTAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104101 lncRNA upstream 47607 32821243 ~ 32821488 (+) True G77867
TU104096 lncRNA upstream 102587 32766271 ~ 32766508 (+) True G77862
TU104008 lncRNA upstream 415685 32453187 ~ 32453410 (+) True G77776
TU103989 lncRNA upstream 492182 32374697 ~ 32376913 (+) True G77762
TU103992 lncRNA upstream 500017 32360545 ~ 32369078 (+) True G77764
TU104133 lncRNA downstream 39984 32928334 ~ 32979901 (+) True G77883
XR_005639907.1 lncRNA downstream 63627 32951977 ~ 32952703 (+) True LOC120563080
TU104139 lncRNA downstream 129171 33017521 ~ 33050500 (+) True G77887
TU104142 lncRNA downstream 133748 33022098 ~ 33029791 (+) False G77890
TU104143 lncRNA downstream 133748 33022098 ~ 33028671 (+) True G77890
XM_039804931.1 mRNA upstream 447623 32405133 ~ 32421472 (+) False LOC120561717
XM_039804930.1 mRNA upstream 448911 32405133 ~ 32420184 (+) False LOC120561717
XM_039805906.1 mRNA upstream 494908 32315022 ~ 32374187 (+) False LOC120562270
XM_039805905.1 mRNA upstream 494908 32318207 ~ 32374187 (+) True LOC120562270
XM_039805907.1 mRNA upstream 554182 32309084 ~ 32314913 (+) True elp6
XM_039805774.1 mRNA downstream 4181 32892531 ~ 32900329 (+) True tnfaip8l2b
XM_039805775.1 mRNA downstream 4191 32892541 ~ 32900329 (+) False tnfaip8l2b
XM_039805771.1 mRNA downstream 17011 32905361 ~ 32911192 (+) True scnm1
XM_039805772.1 mRNA downstream 17045 32905395 ~ 32911192 (+) False scnm1
XM_039805770.1 mRNA downstream 17969 32906319 ~ 32911192 (+) False scnm1
XR_005639638.1 other upstream 447623 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other upstream 447623 32405133 ~ 32421472 (+) False LOC120561717
TU103881 other upstream 889186 31976318 ~ 31979909 (+) True G77682
TU103600 other upstream 1732949 31134829 ~ 31136146 (+) True G77447
TU103301 other upstream 2744457 30123702 ~ 30124638 (+) True G77239
TU104140 other downstream 212063 33100413 ~ 33101534 (+) True G77888
unassigned_transcript_355 other downstream 737581 33625931 ~ 33626002 (+) True trnap-agg_3
unassigned_transcript_356 other downstream 742689 33631039 ~ 33631110 (+) True trnap-agg_4
unassigned_transcript_357 other downstream 743292 33631642 ~ 33631713 (+) True trnap-agg_5
TU104301 other downstream 950726 33839076 ~ 33861112 (+) False bmper

Expression Profile