RNA id: XM_039805770.1


Basic Information

Item Value
RNA id XM_039805770.1
length 1027
RNA type mRNA
GC content 0.45
exon number 8
gene id scnm1
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 32905361 ~ 32911192 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACATTGCTATCAGCATTTAGCTTCTCGTTGTCGTGAAGTAGCTAGCTAGTCAACTATGCTAACCTGTTACTGACATCTGTTTCCAGATTAATAACTATAATAATTATGTCTTTTAAAAGGGAAGGTGATGACAAGAGTCAGTTGAACATCCTGAAGAAACGGCGTGTGGCAGATCTTCTGTCTCATTATATTCCAGAAGATGAAGCAGCTCTTATGAAAAATGGAAGATACACTTGCCTTGTGTGCTCCTACCGTCCCGTGTTTGATACAGTTGATACGTTGACGGTCCACAGAAACGGGAAAAAGCATCTAGAAGGATTAAAAGCTTTCTATGGCAAGAAAGCACGGTTGAAGaatgaaatgacaaaaaggCACCATGAAAACTACATCCAGACTGAAGACACAAAACAGGAACCCTCGTGTTCAGCCCCTTTGCTGGCCCAAACACGGAAGCTTACACATCACGCTTTGTTGAAGACTGTACCATATAACAGCTGCCATACTAAAACCAGtACAAAATCTGGAGAAGGAGCCCGGAGAATCAGCTCAGATCCCAGTGACAACTCTTGCAGCGAAACAGCATCCGAACAAGAAAAAGCATGCCAAAAAACTAAAGTTTCAAACAGTTTATCACAAAGCACGTTTAATGGCTGCACAGCAGccgTTGAAGGGTCGCATCCGGACATTAAGGCCGAGGCCTCAGTGACACAGGAGGCAGAGCCCATAACAgcgcagaggaggagagagctgGAGCACTACCTCAAACTGAAAAGTGACGGGTGGTTGCCAGACCGAAGCGGCCAGTGGGTGAGAGACGAGAATGTGGAGTTTGATTCAGATGAGGAGGAGCCTACTTCGCTCGCCCCTCAACCTACAAGTCACTAAGACGACTATGGGAAACTgtgggaaaacacagatgaactTGTTCCACATTGGTACATTCAGAGGCCTCAGGCTGTTTGAAACAGCCGGAGCACCACGTGTAAAGACTTCATTAAAGAGATTTGTACTAATAATCAACCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104101 lncRNA upstream 84831 32821243 ~ 32821488 (+) True G77867
TU104096 lncRNA upstream 139811 32766271 ~ 32766508 (+) True G77862
TU104008 lncRNA upstream 452909 32453187 ~ 32453410 (+) True G77776
TU103989 lncRNA upstream 529406 32374697 ~ 32376913 (+) True G77762
TU103992 lncRNA upstream 537241 32360545 ~ 32369078 (+) True G77764
TU104133 lncRNA downstream 17142 32928334 ~ 32979901 (+) True G77883
XR_005639907.1 lncRNA downstream 40785 32951977 ~ 32952703 (+) True LOC120563080
TU104139 lncRNA downstream 106329 33017521 ~ 33050500 (+) True G77887
TU104142 lncRNA downstream 110906 33022098 ~ 33029791 (+) False G77890
TU104143 lncRNA downstream 110906 33022098 ~ 33028671 (+) True G77890
XM_039805774.1 mRNA upstream 5990 32892531 ~ 32900329 (+) True tnfaip8l2b
XM_039805775.1 mRNA upstream 5990 32892541 ~ 32900329 (+) False tnfaip8l2b
XM_039805766.1 mRNA upstream 17969 32853357 ~ 32888350 (+) False LOC120562193
XM_039806159.1 mRNA downstream 36119 32947311 ~ 32950710 (+) True LOC120562446
XM_039805115.1 mRNA downstream 121047 33032239 ~ 33049137 (+) True hormad1
XM_039805114.1 mRNA downstream 122543 33033735 ~ 33049137 (+) False hormad1
XM_039804862.1 mRNA downstream 175998 33087190 ~ 33096138 (+) True onecutl
XM_039807226.1 mRNA downstream 264717 33175909 ~ 33200642 (+) True lingo4b
XR_005639638.1 other upstream 484847 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other upstream 484847 32405133 ~ 32421472 (+) False LOC120561717
TU103881 other upstream 926410 31976318 ~ 31979909 (+) True G77682
TU103600 other upstream 1770173 31134829 ~ 31136146 (+) True G77447
TU103301 other upstream 2781681 30123702 ~ 30124638 (+) True G77239
TU104140 other downstream 189221 33100413 ~ 33101534 (+) True G77888
unassigned_transcript_355 other downstream 714739 33625931 ~ 33626002 (+) True trnap-agg_3
unassigned_transcript_356 other downstream 719847 33631039 ~ 33631110 (+) True trnap-agg_4
unassigned_transcript_357 other downstream 720450 33631642 ~ 33631713 (+) True trnap-agg_5
TU104301 other downstream 927884 33839076 ~ 33861112 (+) False bmper

Expression Profile