RNA id: XM_039805774.1



Basic Information


Item Value
RNA id XM_039805774.1
length 1305
RNA type mRNA
GC content 0.49
exon number 3
gene id tnfaip8l2b
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 32892531 ~ 32900329 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CAAGCAGAGGCACAACGTCAGCAATACAGACAGAGACgagcagggagagagacagaccggATCACAGAGAGTGCCAAGGTGTGATGAGCGAAGGGCAAGAGAGAAATACAGGGGGTTTGAAgagtttgaatttgaatttcagagggaaacaccagatagggtagagagagagagagtaagacagagagagagagagagagagcgagagagagagacactgaggGGTGTGTCATAGCAAGTTAGTTCCTCGAGGAAGTACAACTCAACATTATCTTAAGACAGGGTGGCAGCACTGACAGAAGCGCTGCAGGAGGGCgcttttttcagattttggtTCTGCTCGTGGTGAAGATAAAGGGATCTCATTAAATCAACCGACCTGTGCTGTCAGCCTTAAACACAGAGcagagtgagaggagagagagagagatatctgACACACACCAAGAGGGAGGgggactcaacacacacacacgcacacacacagGCAGCCATGGACTCCTTCAGCTCCAAGGACATGGCCTTGAGGGCGCAGAAGAAGATCCTGAGCTCCATGGCCACCAAAAGCTCTGTCCAAATGTTCATTGACGACACCACCAGCGAGATCCTGGATGAACTGTACCGCGTCTCCAAAGAGTACTCTGGTAATAAAACGGAGGCCCAGAAGGTGATCAAAGACCTGGTCAAGATTGCCGTGAAGATTGGCTTGCTGTTTAGGAACAACCGTTTTAGCACCGAGGAGCTGGCAGTGGCCACCGATTTTAAGAAGAAGCTGCACCAGGGAGCCATGACGGCTATCAGCTTTTACGAGGTGGATTTTACCTTTGATAAAGCAGTGATGGAAGAACTCCTCACCAGCTGCAGGGATCTGCTGCTGAAGCTAGTGAACACCCACCTCACCCCTAAATCCCACGGTCGCATCAACCACGTCTTCAACCATTTCTCTGACCCAGAGCTCCTGACCAAACTGTACGACCCCAGCAGCCCCTTTCGAGACCACCTTACCAAGATCTGCAAAGGACTCGACAAACTTATGGAGGAGGGGACAATATGACATAGAAATAATACaatcacagacagacactggGAGATCAACAGGCAAGACTCAGCTGAGACTCAGAACTGTTGAACACAACTGGTCTTACTGCTGCGGAGGACTCGCAACGCAAGACAATTGATTTGAGAACAAAACTGCTGCCCCATCGTTCTCAAAGAACATGTgggattaaaaaataaagttggttgactcatagtgcgttccatttgtactcggaagtcgGAATTTCCAAGTTCAAAGTCCGGCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU104101 lncRNA upstream 71043 32821243 ~ 32821488 (+) True G77867
TU104096 lncRNA upstream 126023 32766271 ~ 32766508 (+) True G77862
TU104008 lncRNA upstream 439121 32453187 ~ 32453410 (+) True G77776
TU103989 lncRNA upstream 515618 32374697 ~ 32376913 (+) True G77762
TU103992 lncRNA upstream 523453 32360545 ~ 32369078 (+) True G77764
TU104133 lncRNA downstream 28005 32928334 ~ 32979901 (+) True G77883
XR_005639907.1 lncRNA downstream 51648 32951977 ~ 32952703 (+) True LOC120563080
TU104139 lncRNA downstream 117192 33017521 ~ 33050500 (+) True G77887
TU104142 lncRNA downstream 121769 33022098 ~ 33029791 (+) False G77890
TU104143 lncRNA downstream 121769 33022098 ~ 33028671 (+) True G77890
XM_039805766.1 mRNA upstream 4181 32853357 ~ 32888350 (+) False LOC120562193
XM_039805768.1 mRNA upstream 4181 32869095 ~ 32888350 (+) True LOC120562193
XM_039805769.1 mRNA upstream 4181 32869104 ~ 32888350 (+) False LOC120562193
XM_039804931.1 mRNA upstream 471059 32405133 ~ 32421472 (+) False LOC120561717
XM_039804930.1 mRNA upstream 472347 32405133 ~ 32420184 (+) False LOC120561717
XM_039805771.1 mRNA downstream 5032 32905361 ~ 32911192 (+) True scnm1
XM_039805772.1 mRNA downstream 5066 32905395 ~ 32911192 (+) False scnm1
XM_039805770.1 mRNA downstream 5990 32906319 ~ 32911192 (+) False scnm1
XM_039806159.1 mRNA downstream 46982 32947311 ~ 32950710 (+) True LOC120562446
XM_039805115.1 mRNA downstream 131910 33032239 ~ 33049137 (+) True hormad1
XR_005639638.1 other upstream 471059 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other upstream 471059 32405133 ~ 32421472 (+) False LOC120561717
TU103881 other upstream 912622 31976318 ~ 31979909 (+) True G77682
TU103600 other upstream 1756385 31134829 ~ 31136146 (+) True G77447
TU103301 other upstream 2767893 30123702 ~ 30124638 (+) True G77239
TU104140 other downstream 200084 33100413 ~ 33101534 (+) True G77888
unassigned_transcript_355 other downstream 725602 33625931 ~ 33626002 (+) True trnap-agg_3
unassigned_transcript_356 other downstream 730710 33631039 ~ 33631110 (+) True trnap-agg_4
unassigned_transcript_357 other downstream 731313 33631642 ~ 33631713 (+) True trnap-agg_5
TU104301 other downstream 938747 33839076 ~ 33861112 (+) False bmper

Expression Profile