RNA id: XM_039805792.1


Basic Information

Item Value
RNA id XM_039805792.1
length 5228
RNA type mRNA
GC content 0.40
exon number 7
gene id osgin2
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21561788 ~ 21570071 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caacacacaacacaaacacacacacacacacacacacacacacactgactgccATCAAGACACAGAGAAGATCTAGCCTATAGCCTACCTCTGAGACGACATTTATAGGCTGTTCAGAATTGAATAAACCAGGACTACTCGAATTTAGCTGGACggagTGCGTGTGAGTCAGCTGATGATGGTGGATGGAGACAGAGATCTAAGCTAACAtgagacaacaacaacattggcagacacaaagacagcaaGCCGTGCCGGCTCTGGCCCAGGCTGCAGCCATGCCTCTTCTGGAAGAGACCACTCTGCCACAAGATCACCCACCGACTGTCCCCGTGGTCATCATAGGAAATGGCCCATCAGGTATTTGTCTGTCCTACCTGCTGAGTGGACACAAGCCCTACCTAGATACAGCAACTGTTCACCCGAACCCAATAATATACAGGAAACTGCAGGAGACAAAGCACCTATCCATCACTGAACAGGATCTGGAATATTTGAGTGAAGGTCTTGAGGGGAGGTCAAGGAACCCTGTGGCTGTGCTTTTTGACACACTTCTGCACCCCAATGCTGACTTTGGCTACGAGTTCCCCCCTGTCCTTCAGTGGCGGAGGGACAAGCAGCACCACATCCCTCATCTGGTGCTGGGGAGGGCAACGCCTGGAGGTGCTTGGCATGCAATGGAAGGCTCCATGCTGACTATTAGTCTTGGCATCTGGATGGAGCTTCCAGGGGTTAACTACAGGGACTTGACCAACGGGAAACGCAGGGATGCCACCAGTGACAGAGCCACCCCAGAAGAGATCTCATCCTATTACCGTAACTATGTGAAGCTTAAGGGCCTCCAAAAGAATTTTGTTGACAACACCTACGTGACCTCTGTCCAGAAACTCTGCCGGGGGCACGAGGGAGAAGGTCTGGAAAATGGGCACACTGATCAAGGAGATGGAGGGGTGGGAGATGGTGGGAATGAAGGCTTTGAAGTAAATGGAGTTGAGTGTCTAAACAATGGAGGAGGGGGGGCTCTCTGGGAAGTAAGGGGATACCAGCAGGTGCAGAACGACACTCATGTGCCCTTCTCTTTGTTTGCTGAGAACGTAGTTCTGGCCACCGGTGCATCTGATTCACCGGTTCGATTAGGTGCAGAGGGTGAGGACCTACCATTTGTATTCCACAGCATCTCCGATCTAGGCTTGGCTGTCAGCCGTAGAAAACTGGATATGAACTCTGATCCGGTTTTGATCGTAGGTGCTGGTTTAAGTGCTGCAGATGCAGTTCTGTGCGCTTGTAACAGCAACATCAGAGTGCTGCATGTCTTTCGTAAGAGCGTAGACGACCCAGAACTTATCTTCAAACAGCTGCCCAAGACCTTGTACCCAGAGTACCACAAAGTCTACAACATGATGTGCTCTCAGACCTACACAAATGTGGCTCCCTCCTCTGCTTTAAACAGACCCCAGGCAGTAAGTATCGCCTCTTCAGTATGTGCCAAGATGTGCCCAAAGCCCCAACTTGCTGCAGGTAACATGGCTGGTAATACCAGTGTCAGCCTGTTTCCTGACTACACTAGTTTCCCCGAACACTGCGTGGTGTCCTTCCAGTCTGACATGAAGTGTTTGTTGCAGGGGAACAACTCCCTCAAGGCCTTCAAGATCTCCATGGCCCTAGTGCTGATTGGGACCAACCCAAACTTGTTTTTTCTGAAGGGGCAGGGCCAGTACCTGGGTCAGGATCCAACAAAACCCATCTCCTGCACGCAGAACCCCATTGACATCCACCCCTACACTTTTGAGTGTACCAAGGAGCCAGGTCTGTTTGCCATGGGCCCGCTGGTGGGAGACAACTTTGTTCGCTTTTTGAAGGGTGGTGCTTTAGGCATTGCCTCGTGTCTGCTGAAGAGACTCAAGAAGAAAGGGAAGCTCATCAGCAATGAAGAGAATAACTTTATTTGAAAACATGATGAAGAAAAGAGCTGTACACATTGGTTGTAGAGCAGATTTCAAGCGCTCCTACCAACTAATGTAAAAGATGAAGGGGAAAACAAGTTTGTTTTAATCATTTAGGCAGTGTTTTCTCATCAAAGCTAAGGCATTTTTACAACTTTCTGAGACCTAAAAGAAAATGGATGTACACTAATTAGTTTctaaagaaacaaaacacagcTTTCAAAAGTCTTGTTTGACTCCATAAGAAGTGCCCAGAAGTCCAAGCTACCATGTGCCAATGTTTTCTAGTCAATCTGTACCTCACAACTGAATGGGACCTTATTTTCATCAgggttatttattcattcaccATGTGTCTTTCAATCCATTTACTAACAACCGTTAAATTGGTGTCATATCACATCACACTTTAAGTCgtattttagcttttagttgtacAACCTGGAGTGGTGAGTGTTATAGTGGACGCCAAGATTTATCCAAGATTTATCTTGGAATGTGTAAACCAACAAGTTCATGGCTAAGCAATCTTGATGTTCCTGATTATTCTGAGCCTGCCTTTTTAACTTCAGAGGATTCTTTGTTTAGCTGCTATTGTAGGTAGTTGGAGccatatacataaaaaaagaaagaaaagtcttAAAAATCTGAACTGTTGCTTTGGTTATAGTGCGACTGAAAGGCTTTCTTGGATCACGACTGGCAGACCATGCTCTCATAGGCAAGAAGTCGGTTCGATTGCATTCAGGCTCGATTGCCTATCCTGTCCTGGGTAGCCCAGATGTTGCTATGTGAATTATTTCATCTTGAATTTTTGGATCTGAATTTGAGCAACCTGAATCAATCTTTTTGAAATTTGGAAACTTGACTTTTTGGATCTGATGATTTGtgattattgaaaaaaaaaaatttaattcagcttttgaaatgcaaatcaaaaaaattcatattttaatttcaaagaGGTAAATTCAGAACATATTCAGATACATGACTTTCAAATTAATATAATTCAATATTACATAAtcagtggctgttaaaattcaaaTAATTATGTCTCTTATTTGCTTCCATATTCTATGCAAATAATTTCACTTGCAGATCTGAATGTATTCTTGGACACCAATTGCTACGTTTGAATTCCTGGCAAAAGATATGGTCATTAAAGGATCATTCTGGTGtttaacattttcttcttttttattcatttccACTATGGACAACTTCAGAAGAACGGTAAACATCTTggcagattttatttttgtttagatTTACATTCAAAACAGTAACACCAATAAtgatgctttttatttttttattttccagaaCGATAGTGAACTTTCTCCATTTGGCAGCCAACTTTCCATTCTGAGACTTGTAAAAACATGGGCATGGTGTTTACCAAGATGGTTCTTTAGCAGtacaagaacaaatataaaataGGATAAAACAAGAAATACCAGTATGATCCTTTAAACTTAACAACTGCCAATTACATCATGACaaaaatatagtgaaaataTAACACTATTCTTGCCATagcaatacatttatttaaacgCAACAATTACAACACTTTGTGCGCATTTTCTTGTTCTTTTCGCCAGTCACACATGAAGAGAACAGGCTTTCAAAGAAAGAACAGAAAAGCACACTTGCAGAAAACCCATTTTTACAATCATACAATCtaaataattttatatttttagcaAACCAAATCTTAGTatcctttgtattttttataattacataGTGCCATTTTTAGCATGTTGTAGTTATCTTCGTGATGGCTAATATCTAAGCTCCATCTTAGAACTATTCAATCTACCTGACTGGGCAATATGTAAATTACTTATTGTCTATGACTGTAGCCATATCATGTTTCTCTTAATAGTGTGAAACATGGCATACAGCTTTGTTTACTTAACACTACATAGGAATTGCCAAGTCAGACTTCTTCCATAGCTATTTCTGAAATACACCAAGGCAGGTGATTTCCTAAACATGATCAATATAAGGACTTTCGGATTTTCCACATTGCCCAACtctacatgtgtgtatatacaaaATTCTTCTTCCATTTTTTAATACAGCTTCGAAGCAAACAGCCAATATTGTTTTGTTAAGTATCAAATAAGAGAGCGGAgcaatctatttttcatttttactgtaGTTTCCTTCATCAATCACTGTCTGCAAGAGTGTGATGCCATATGcataatttgttttgtgtgctgCACAACTCATGGTTTGTTTATTGTGATGTGACACTTTGATCTCTGTGTAGGGAATTTTTTCTTCTGGCTCCTTCAATACAATATGGTAGTCAGTCAGTGTTGGGGGTAATTACTAAAATAAAATGCTACTGTAGTCACATTACTTTTTCCACTAACAAAGTTAATAGTTTAACAAATTACTGTATAAGTTTTAGTAATCCTATTGAACTAGTGAAAATGTTATTACTTGTGTTAAATATTGAATTTTAGCTGAATTATGCCTTGATGCTTTTTTCACTGACTTCTGAATATTGTTTTGATATGAATATTAATTACATGCATGCAGGCATGATCCATTGCCTAGCAGCAGCTGCTGTGAGCAGAAGACATAAAAGTGCTATAAGAACAGATGTGGAAAGAGTACATTTAAGGACTGCAGAGACTTGGTGACTTAAAAGTGGAGATAACTCGTATTATTGGTTTGAATTTActtaaaggaagaaaaaaaaaaaaaatatgacccTGGGCATATCAGGTTGGACACAACTGTCCACCGCTTTCAATTCCAAGAGCAATCTGCTTGCTTAATTAAGCACCAACAGGTTTATTGTGTGTCCATCCATATACTTTACATTTTAGTACAGATTTGTATGAATTTTAGAAAGCAACTTGCAAGTACTATgtataataaacaaaataatccCATTGCAATTTAAGAAAAATAACTGTTTAAACTTCCACAATACATGCTGAATATGAATGGACAGATGGGCTTCAACTATCTGCACAGAAAGGCCCATAAATGTTTGGCATGATGACAGTTTCAGATCTGTAAAAGTGCCTGCAGGCTCATCGGAGATGAAGATTAAGAAACAGCAACTTGAATCCCTCTAAGTTTCTATTTCAGCTAAAACCAGGAAACAAATTTGGTCTTAACTTTAAAACCAAGGAATAGCTGCTTTCAGCATGTAGAGTTGAAATGCTCTCTTGTACAATTGAagagtttttaatgttttgtatgccacattttttattattgacaaATAAAACTTTGAGAGAAATCTCTGAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99494 lncRNA upstream 226095 21334669 ~ 21335693 (+) False LOC120563169
TU99367 lncRNA upstream 269408 21291042 ~ 21292380 (+) True G74288
TU99366 lncRNA upstream 271474 21289553 ~ 21290314 (+) True G74287
TU99365 lncRNA upstream 272413 21289171 ~ 21289375 (+) True G74286
TU99348 lncRNA upstream 318221 21243229 ~ 21243567 (+) True G74274
XR_005639855.1 lncRNA downstream 154877 21724948 ~ 21725705 (+) True LOC120562851
TU99850 lncRNA downstream 466207 22036278 ~ 22036659 (+) True G74673
TU99814 lncRNA downstream 513611 22083682 ~ 22084524 (+) False slc50a1
TU99858 lncRNA downstream 520549 22090620 ~ 22091916 (+) False slc50a1
TU99933 lncRNA downstream 545545 22115616 ~ 22116026 (+) True G74729
XM_039805782.1 mRNA upstream 5770 21493414 ~ 21556018 (+) True adam22
XM_039805783.1 mRNA upstream 5770 21493415 ~ 21556018 (+) False adam22
XM_039805784.1 mRNA upstream 5770 21493416 ~ 21556018 (+) False adam22
XM_039805785.1 mRNA upstream 5770 21493418 ~ 21556018 (+) False adam22
XM_039805786.1 mRNA upstream 13600 21493416 ~ 21548188 (+) False adam22
XM_039807044.1 mRNA downstream 25000 21595071 ~ 21597057 (+) True si:dkey-87o1.2
XM_039804688.1 mRNA downstream 28963 21599034 ~ 21603458 (+) False them4
XM_039804689.1 mRNA downstream 28964 21599035 ~ 21603458 (+) False them4
XM_039804690.1 mRNA downstream 28970 21599041 ~ 21603458 (+) False them4
XM_039805032.1 mRNA downstream 38388 21608459 ~ 21627308 (+) True rorc
TU99513 other upstream 157185 21403127 ~ 21404603 (+) False crot
TU99269 other upstream 550417 21008033 ~ 21011371 (+) False sec61b
TU98645 other upstream 1912277 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 2402793 19148613 ~ 19158995 (+) False G73570
TU99582 other downstream 28984 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 199477 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 562507 22132578 ~ 22136234 (+) True LOC120561539
TU99946 other downstream 567494 22137565 ~ 22139223 (+) False LOC120561537
TU99979 other downstream 627723 22197794 ~ 22199818 (+) False kcnn3

Expression Profile