RNA id: XM_039805795.1


Basic Information

Item Value
RNA id XM_039805795.1
length 2674
RNA type mRNA
GC content 0.46
exon number 11
gene id rundc3b
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 21467069 ~ 21478945 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCAGGTTTGTGTTGCCCCTCCTTCAGCTGAGCATCCTGTGTTGCTCCGGTGTGACGGAGACAGCTACCCTGGTGCAGAGGGAGCGGAGAGGGGACTACGCACCTCTTCCGCCCGCAGCCTAGGCTCGGACACGGGCCGGGGATGGCTTCGCTCGGCGTGGGGCTGCATCTCATCCGTAAGAGGGGAGCAGGCAGGAGTGCCGCGGTTGAGAGGAGGAATCTTCTCACGGTGTGCAGGTTTTCAGTGAAGACTCTACTAGACCGCTCCTGTTTTGAGACAATAGATGACACATCTCCAGACTTTGTTAACTTTGTTTCCATCCTGGAGCACATTCTCAGTCATCGACTCAAAGGTCAGACCACTTGGTTTGGCTATGAGAGTCCTCGAAGTTTCTGGGATTACATAAAAGCTGCCTGCGGTAAAGTCCCTCATAATTGCATCCGAAGCATCGAGAGCATGGAGAATGTGCGAGCGTCCAGAGCTAAAGGCAGGGCATGGATCAGAGTGGTCCTGATGGAGAAAAGATTATCAGAATACATCTCATCTGCACTGAGGGACTTCAAAACCACCAGGAGGTTTTACGAGGACGGAGCGATCATGCTGGGAGAGGAGGCGGGGCTGTTGGCAGACACACTCATCGGACTCAACACCATTGACTTCAGCTTCTGTCTGAAAGGAGAGGGTCTGGACGGCAGCTGTCCCGCCGTGATCGACTACACACCTTACCTCAAGTTCATTCAGAATGCAGACAGCATCAGCAGCGACGAGGAGGAGATGAGGACTATGGGGAGCAGCGGCAGTGAGAGCAGCAGCCCCGACAAAATGGCCACGGCCGCCTCCATCTTCACCGAGCAGAGCAACTTGGTCAGCAAGTGCAAACGCTTTGAGCAGAAGTACCGAATGGCACTGGAGCAGAagGGTTACCTGGAAGAGCTGGTCCGTCTACGAGAAGCCCAGCTGTCAGAGGCTGCGTCTCATAACAAAGCTCTTCAGCAGAGCCTAGCAGACACACACCTCTCCCACAcactagagaaagaacagcttGAGTACATCATACTGGAACTACAGGACCAACTGACGGTGATGAAGAACAATGATTTGCGGTCCAGACAAGAGTTGACAGCCcatctgaccaatcagtggcCATCTCCCGTCGCCTTGGATGCCAACGCTGTTGCCTTGGACACGCTGCTGTACAGGAAGACCATGGGACAGTGGGAAGAGAAGAGTTTCCAGAGTCTGGAGCAGCTGTCTGCAGACATGAGTCTCTCCCAGACGTCTCTTGgaccgacacacacactgagtgtGGAGGCCAGGCCGACCGGCACACACTGGCCCCACCAAGGTAAAGAGGAGACTCCTTCTCTAAGAGGTCTGTGTGGCTCCCTGACCTCAGTCGCCAGCTACAAGTCTTTGGCCAGCCTGAAGTCCAGCGAGTGCTTGGCCAGTCCTGCAACAGAGATCAGCAGCCCAGGCTTCACTCCTTCATAGGGAAcggagagcaaaaaaaaaaaaaaaagcagatctCCACCAGGGCCAGACAATCCAGGAACTTTCTTAATGTAGGTTATATTGATTTGTAGACTTATATGTTCTGTATATTGAGCCCAGAGCTTTAACAGATAGTCAGGTTTTTAAGTTGAGGATCTGGTGTAGCATGTTCTTTAAACTCAAGAGCAGCTCCATCAGACCCGAATAATGTCTTATTAATGATCCATTCAGCTGAAACAACCTCCTGCTGTTACTTCACaagtatgtttttgtttatgttttgttggaGTTTATCTGTGGagcatctgttttttttcttttatatgaaataaattaaaatgacagacAGCTGGTGTAAGAATGGAAAAGTTTACCAGGAGATGATAGCATGCTGAAAATACAGATCAGAGTTCtgagaaaacacaaaatactgAGAGCCTCAATCGTTCGTCTCGTCACTACGAATCATTTCCTGCAGTTGACAGGGTCTTTCATTATCTTGTCCTGTTACTGCTGCCACTGAATGTGTATAATTGTTTTTTCATATAGTAGTCTTTTTGATTTATGATGAATGCACCTCCACTTTTATCAGCTTATATCAGCAAAATTTTGCATAATGCCATCTTACATTGTATTCTTATGTGTAAATGTTCTTGaacttttctgtttttatttttgttttattttattagggtTATGTTGTCAATGTTGTGCATAATGCAGTGTCACATGGTTTTGTTCTCAGGTAATGATCCCTGCGATTAATATTCCCCCTCCACTTCTGGGTTTACTTTAAAGTTCAGCTTTATCAGATACAGACTCCTGTTATTATTCCCTTTAATAAATCAAATGCAGTATTTTAATGGGTAGTTTTACCACAAAATAGACAAAATTcctaaaattataaaataaaaattcagaataatgACCTGTGTCAGAACTCAGTAAAGAATATATTGCAACAGATATTTGTGAGAATGAGAAAcaagtgtatttaaaaaaatatcagttaaatgtaatttgtattaTTCGTGTGTAGCCGTGTACCTCAACACTGTACTCGTGACTTTGCCTTTAGCTCATTCTAGCAGTCATTTGCACAGACCTGCAGCAGATGTTTGATTGGATTTATTTGCCTTTTTATCCTTCATTTTGAATAAACTGCACTTACTCAAACAGTGA

Function

GO: NA

KEGG:

id description
K24787 RUNDC3; RUN domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99494 lncRNA upstream 131376 21334669 ~ 21335693 (+) False LOC120563169
TU99367 lncRNA upstream 174689 21291042 ~ 21292380 (+) True G74288
TU99366 lncRNA upstream 176755 21289553 ~ 21290314 (+) True G74287
TU99365 lncRNA upstream 177694 21289171 ~ 21289375 (+) True G74286
TU99348 lncRNA upstream 223502 21243229 ~ 21243567 (+) True G74274
XR_005639855.1 lncRNA downstream 246003 21724948 ~ 21725705 (+) True LOC120562851
TU99850 lncRNA downstream 557333 22036278 ~ 22036659 (+) True G74673
TU99814 lncRNA downstream 604737 22083682 ~ 22084524 (+) False slc50a1
TU99858 lncRNA downstream 611675 22090620 ~ 22091916 (+) False slc50a1
TU99933 lncRNA downstream 636671 22115616 ~ 22116026 (+) True G74729
XM_039807363.1 mRNA upstream 5858 21458499 ~ 21461211 (+) True LOC120563194
XM_039805134.1 mRNA upstream 51175 21405484 ~ 21415894 (+) False crot
XM_039805136.1 mRNA upstream 51175 21405651 ~ 21415894 (+) False crot
XM_039805135.1 mRNA upstream 51176 21405506 ~ 21415893 (+) False crot
XM_039805137.1 mRNA upstream 54181 21405483 ~ 21412888 (+) False crot
XM_039805788.1 mRNA downstream 6104 21485049 ~ 21491551 (+) True dbf4
XM_039805782.1 mRNA downstream 14469 21493414 ~ 21556018 (+) True adam22
XM_039805783.1 mRNA downstream 14470 21493415 ~ 21556018 (+) False adam22
XM_039805784.1 mRNA downstream 14471 21493416 ~ 21556018 (+) False adam22
XM_039805786.1 mRNA downstream 14471 21493416 ~ 21548188 (+) False adam22
TU99513 other upstream 62466 21403127 ~ 21404603 (+) False crot
TU99269 other upstream 455698 21008033 ~ 21011371 (+) False sec61b
TU98645 other upstream 1817558 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 2308074 19148613 ~ 19158995 (+) False G73570
TU99582 other downstream 120110 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 290603 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 653633 22132578 ~ 22136234 (+) True LOC120561539
TU99946 other downstream 658620 22137565 ~ 22139223 (+) False LOC120561537
TU99979 other downstream 718849 22197794 ~ 22199818 (+) False kcnn3

Expression Profile