RNA id: XM_039805800.1



Basic Information


Item Value
RNA id XM_039805800.1
length 910
RNA type mRNA
GC content 0.54
exon number 6
gene id LOC120562211
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 30951233 ~ 30965417 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AGTAGGACCGGGGCCGTACAGCCCACTGCAGCCGCGGTAGGCTACTTCCGTTCCGCAGAGAGCGACAGGCACCAGCCAGCCTAGACTGTGGCGGAGGTCCAGACACAATAGACTGGGTTCCGGCTCTTCTCCAATCCAAACCGGTATGTCGGATGAGGATTCCCGTGCAAGCACCAGCTCTTCTTCATCGCCGCCTTCCTCCAGCCAAAacagacagagggacacacTTTGCAAAAAGAAACGGGAGAGCAAAGCCAGCATGAGCAAGACCTCCAAGCTGCTTTCCACCAGCGccaaaaggatTCAGAAAGAGCTGGCTGATATTACACTGGACCCTCCGCCAAACTGCAGtGCTGGCCCTAAAGGAGATAACATCTATGAGTGGAGGTCGACCATCCTGGGACCACCGGGCTCCGTGTACGAGGGAGGCGTCTTCTTCCTGGACATCGCCTTCACACCCGACTACCCCTTCAAACCCCCCAAGgtaACTTTTCGTACGAGGATCTATCACTGCAACATCAACAGTCAGGGGGTGATCTGTCTGGACATCCTGAAGGACAACTGGAGCCCCGCCCTCACCATCTCCAAGGTGCTGCTGTCCATCTGCTCCCTGCTCACAGACTGTAACCCAGCCGACCCCCTGGTGGGAAGCATCGCCACCCAGTACACGACTAACAGAGTGGAACATGACCGAACAGCCAAACAGTGGACGAAACGATACGCCACATAAACCCACAGAGGACGgcagtggggggaggaggaggaggaggggtggggggctcCGGGTGGTTTGTGTTGGGCGGGTTATTTCTATCTCAGATTTTTAGTACTTTATTGTCTGGTATATTTTTTGCTTCCTGATTAAGTTATCTTCACAAATATGGTAATAAAGGAACACAATGGAAAGGAA

Function


GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K20217 UBE2E; ubiquitin-conjugating enzyme E2 E

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU103458 lncRNA upstream 219633 30687338 ~ 30731600 (+) False rab5ab
TU103334 lncRNA upstream 548529 30398276 ~ 30402704 (+) True G77260
TU103340 lncRNA upstream 590703 30360158 ~ 30360530 (+) False LOC120562443
XR_005639712.1 lncRNA upstream 732630 30216748 ~ 30218603 (+) True LOC120562235
XR_005639690.1 lncRNA upstream 830137 30119598 ~ 30121096 (+) True LOC120562092
TU103534 lncRNA downstream 11324 30976741 ~ 30977081 (+) True G77399
XR_005639811.1 lncRNA downstream 12910 30978327 ~ 30988733 (+) True LOC120562708
XR_005639812.1 lncRNA downstream 49716 31015133 ~ 31016447 (+) True LOC120562710
TU103737 lncRNA downstream 548719 31514136 ~ 31514561 (+) True G77555
TU103736 lncRNA downstream 552346 31517763 ~ 31518618 (+) True G77554
XM_039805799.1 mRNA upstream 2045 30909030 ~ 30949188 (+) True LOC120562210
XM_039806816.1 mRNA upstream 219624 30723097 ~ 30731609 (+) True rab5ab
XM_039806815.1 mRNA upstream 219624 30723097 ~ 30731609 (+) False rab5ab
XM_039806574.1 mRNA upstream 237842 30705031 ~ 30713391 (+) False si:dkey-82o10.4
XM_039806573.1 mRNA upstream 237842 30705032 ~ 30713391 (+) True si:dkey-82o10.4
XM_039806558.1 mRNA downstream 3164 30968581 ~ 30976242 (+) True nr1d2a
XM_039806559.1 mRNA downstream 23346 30988763 ~ 31008397 (+) False LOC120562709
XM_039806561.1 mRNA downstream 24045 30989462 ~ 30996435 (+) True LOC120562709
XM_039804660.1 mRNA downstream 59567 31024984 ~ 31044407 (+) False LOC120561533
XM_039804659.1 mRNA downstream 59567 31024984 ~ 31044406 (+) True LOC120561533
TU103301 other upstream 826595 30123702 ~ 30124638 (+) True G77239
TU103032 other upstream 1538820 29404008 ~ 29412413 (+) False G77028
TU103024 other upstream 1561341 29384135 ~ 29389892 (+) True LOC120562177
TU103005 other upstream 1620975 29328789 ~ 29330258 (+) True G77009
unassigned_transcript_354 other upstream 2104450 28846712 ~ 28846783 (+) True trnaa-ugc_7
TU103600 other downstream 169412 31134829 ~ 31136146 (+) True G77447
TU103881 other downstream 1010901 31976318 ~ 31979909 (+) True G77682
XR_005639638.1 other downstream 1439716 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other downstream 1439716 32405133 ~ 32421472 (+) False LOC120561717
TU104140 other downstream 2134996 33100413 ~ 33101534 (+) True G77888

Expression Profile


XM_039805800.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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XM_039805800.1 Expression in each Bioproject

Bar chart with 8 bars.
XM_039805800.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1250.
End of interactive chart.