RNA id: XM_039805803.1


Basic Information

Item Value
RNA id XM_039805803.1
length 1344
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC120562213
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 32138778 ~ 32143278 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTGATGATTGGTTGGACATGGTTTGACTGATGTAGAGGTGAAGAAAGAGATGCATATAAAAAGGGCAAAAGAATAGCTTACTTTAGTTTGGGAGCCTTTTTTCTCATCAGACTGTCGAGGTCTCGAGCCAGAATGATGAAACTGCATGTTTTCCTTCTGCTGCTCCTCCTGGAGACGTGCTCAGTTTCCACTTACGAAAATGTGGCCTTGCGTGGAAAAGCAACCCAGTCAGACCGTTATGAGCACGCGTTTGGAGCTGCCGAAGCTGCTATTGATGGAAACCGTGAATCTggttttcattctggatcatgCACCCACACTGATGAAGAGACCAACCCCTGGTGGAGAGTGGACCTGCTGGAGTCCTACATCGTCACTTCAGTCATTATCACCAACAGAGGAGATTGCTGTGAATTAAGGATAAACGGGGCAGAGATCCGCATCGGCAACTCTTTAGAAAACAATGGTGCCTCAAACCCAGTGGCTGGTAAAATTTCTACTATTGGTAGAGGCAAATCATTCACTATGACTTTTACTGATCATGTGGAGGGACGTTATGTgactgtggttgtaccgggTTCAGCAAAGATCCTTACACTCTGTGAAGTGGAAGTCTACGGGTACCGTGCCCCAACTGGAGAGAACCTGGCACTTCAAGGAAAAGCCACACAGTCGTCACTGTACATGTTTGGCGTTGCATACAATGCCATAGATGGGAATAACGGCAGCAGGTGGGAGGACGGCTCCTGcactcacacaaacaacaacatcgACCCCTGGTGGAGACTGGATCTGCCCAAAACCCACAAAGTgttttctgttaaaataaccaACCGAGATGAAGACCCAGAACGACTCAATGGAGCTGAGATTCGCATTGGAGATTCCCTCGCAAACTTTGGCAACAGCAATCCCAGGTGTGCTGTGATCCCAAGTATTCCAGCAGGTGGTGTTGGTGAGTTCAAGTGTAATGGGATGGACGGACGCTATGTCAACATAGTCATCCCAGGAAAAGAAGAGTTCCTGAGTCTGTGTGAGGTGGAGGTGTATGGCTCTCGCCTAGATTAGCTCTGAAGAAGTTCACAatgcatgacaaaaacaaatcacttCATTGTAAACTCATTCATTAGCTCCTAGTGTGACAGCGATTCCATTTGTAGGATTAACATCACTTCTTAGTGCATAAATATTATTAAGTTTGGCCATGTTTCAATTTCTAATTCTGTTGTTTGAGTTGTCTTTTTTAATTCTAGCTTTTTGGAGTACTGTCACAACCTGCTGAAGGATAAAAACTGTATGAATGTCATCAATACTGAAATACAATTAAATCATTAAAACAGCC

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103924 lncRNA downstream 11448 32124664 ~ 32127330 (-) True G77720
TU103922 lncRNA downstream 14408 32122575 ~ 32124370 (-) True G77718
TU103899 lncRNA downstream 161251 31976633 ~ 31977527 (-) False tbx20
TU103897 lncRNA downstream 177127 31958291 ~ 31961651 (-) False G77695
TU103895 lncRNA downstream 179380 31957249 ~ 31959398 (-) True G77695
TU103951 lncRNA upstream 28773 32172051 ~ 32174497 (-) True G77741
TU104027 lncRNA upstream 83990 32227268 ~ 32294617 (-) False G77793
TU104031 lncRNA upstream 106646 32249924 ~ 32250441 (-) True G77797
TU104026 lncRNA upstream 130243 32273521 ~ 32294617 (-) True G77793
TU104063 lncRNA upstream 261014 32404292 ~ 32404638 (-) True G77829
XM_039805806.1 mRNA downstream 1872 32127422 ~ 32136906 (-) False LOC120562215
XM_039805805.1 mRNA downstream 1872 32127422 ~ 32136906 (-) True LOC120562215
XM_039807287.1 mRNA downstream 148413 31976484 ~ 31990365 (-) False tbx20
XM_039807286.1 mRNA downstream 148413 31976484 ~ 31990365 (-) True tbx20
XM_039805807.1 mRNA downstream 196014 31933067 ~ 31942764 (-) True ankmy2a
XM_039805804.1 mRNA upstream 17739 32161017 ~ 32164516 (-) True LOC120562214
XM_039804928.1 mRNA upstream 233638 32376916 ~ 32403422 (-) True ptpn23a
XM_039804929.1 mRNA upstream 234383 32377661 ~ 32403421 (-) False ptpn23a
XM_039804666.1 mRNA upstream 282087 32425365 ~ 32434867 (-) True LOC120561540
XM_039805603.1 mRNA upstream 337366 32480644 ~ 32644969 (-) False sema6e
TU103756 other downstream 619742 31516455 ~ 31519036 (-) True G77573
XR_005639672.1 other downstream 742275 31239787 ~ 31396503 (-) False LOC120561969
TU104072 other upstream 282119 32425397 ~ 32433657 (-) False LOC120561540
XR_005639667.1 other upstream 1447243 33590521 ~ 33597305 (-) False LOC120561932
TU104595 other upstream 1952365 34095643 ~ 34146296 (-) True G78245
TU104620 other upstream 1986765 34130043 ~ 34132106 (-) False LOC120561744
TU104706 other upstream 2349068 34492346 ~ 34493195 (-) True G78321

Expression Profile