RNA id: XM_039805806.1


Basic Information

Item Value
RNA id XM_039805806.1
length 1705
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC120562215
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 32127422 ~ 32136906 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTCCTTAGATGACCAAGACACATTCCTATAAACAGCTTGGTTTAAGGGTTTTAATCGCTCTGTCCCATGTCTGGAAGTGGCATGCCAAAGGTGAAGAAGCTGTTTCTACAACTTGAAGCCTAATCAGCATGATACAGTAACTCTGGCTGAGGCACTCTGGCAGTGGGTGCTGCTGGTGGCAACTACAGAGAGTATCATTCTATCACATTTCAATAAACTACTGAGCTCTGGGGTATATTTCATGGTGTATCCTTAGATGACCACTGGAACCTAGATGAGTAGGAGTGTATGAGTTCACTCTGAAGAAGCTGTTGCTACATTTAAACGTAAAGTCAGCACGATACAGACTTGAATCAACTGACTCCAGGGGTACATCATTTGTTCTAACCAGGAATCAGGAATAATGAAAAACAGTGTGGTTTTTTCTTTGCTGCTCCTCTTGGGGACGTGCTCAGCTTACGAAAATGTGGCCTTGCGTGGCAAAGCAACTCAGTCACTACGTTGGGATGGAGTTTATGGAGCTGCCTACAATGCTATTGATGGAAACCGTCATTCTGATTTTCATGACGGTTCATGCACCCACACTAAAGTACAGACCAACCCCTGGTGGAGAGTGGACCTGCTGGAGTCCTACATCGTCACCTCCATCATCATCACCAACAGAGGAGACTGCTGTCCAGAAAGGCTCAACGGGGCAGAGATTCACATCGGCAACTCTTTACGAGACAATGGTATCACAAACCCATTgGCTGGTGTAATTTCTGAAATCCCTGCAGGGAGCTCATACACTTTGACTTTCGCCAATCGTGTGGAGGGACGTTATGTGACCGTGTCTCTATCTGGTTCAGAGAGGGTTCTTTCACTCTGTGAAGTGGAAGTTTTCGGGTACCGTGCCCCAACTGGAGAGAACCTGGCACTCCAAGGAAAAGCCACACAGTCATCATTACATAGTTTTGGCATTGCGTATAATGCCATTGACGGGAATCGTGCCAGCACGTGGGAGAAGGCGTCCTGCAGTCACACAGCCCAAGAGGCGAACCCCTGGTGGCGACTGGATCTGATCAAAACCCACAAAGTATTTTCGGTTAAGATAACCAACCAAGATGTAAACGAACAATTAATCAACGGAGCTGAGATCCGCGTTGGAGATTCTCTTAACAACAATGGCAACAACAATCCCAGGTGTGCTGTGATCTCAAGCATCCCGGCAGGTCAAACTGTTGAATTCCAATGTGTCGACGGGTTTGATGGCCGCTATGTTAACATAGTTATCCCCGAAAGAAAGGAGTGGCTGGTCCTGTGCGAGGTGGAGGTGTATGGCTCGGTCCTGGATTAGCTTTAACATTTACTTCCATTTGCAAGAATATAGCCAATGTTGTTATATGTACTCAAACTAACCAACATAATAGATCCAGCTTTAATGTGATAGTTAATAGATTTAGCTTTAATGTGATTGTTCACATGACAAATAACCAATAGAATTGTGTGCAACATGGAGTTAAGTTTTAGACAATAGCAAAATGACGGATAAAATGGGTCTTTGATAGTCTCTGTGTTAACATCAGCCTACAACAATCACGTGTGAAACTAGGACACGGTATTGCTCAAAAATGTCCGATACAGATACTGGTACCGATACCATGAATTTGATACCGGATCCTGATTGATACTTTTATTGAAACCAATTTTACCGAAATCCattta

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103924 lncRNA downstream 92 32124664 ~ 32127330 (-) True G77720
TU103922 lncRNA downstream 3052 32122575 ~ 32124370 (-) True G77718
TU103899 lncRNA downstream 149895 31976633 ~ 31977527 (-) False tbx20
TU103897 lncRNA downstream 165771 31958291 ~ 31961651 (-) False G77695
TU103895 lncRNA downstream 168024 31957249 ~ 31959398 (-) True G77695
TU103951 lncRNA upstream 35145 32172051 ~ 32174497 (-) True G77741
TU104027 lncRNA upstream 90362 32227268 ~ 32294617 (-) False G77793
TU104031 lncRNA upstream 113018 32249924 ~ 32250441 (-) True G77797
TU104026 lncRNA upstream 136615 32273521 ~ 32294617 (-) True G77793
TU104063 lncRNA upstream 267386 32404292 ~ 32404638 (-) True G77829
XM_039807287.1 mRNA downstream 137057 31976484 ~ 31990365 (-) False tbx20
XM_039807286.1 mRNA downstream 137057 31976484 ~ 31990365 (-) True tbx20
XM_039805807.1 mRNA downstream 184658 31933067 ~ 31942764 (-) True ankmy2a
XM_039806454.1 mRNA downstream 204714 31918056 ~ 31922708 (-) True sostdc1a
XM_039806451.1 mRNA downstream 210550 31863992 ~ 31916872 (-) False crppa
XM_039805803.1 mRNA upstream 1872 32138778 ~ 32143278 (-) True LOC120562213
XM_039805804.1 mRNA upstream 24111 32161017 ~ 32164516 (-) True LOC120562214
XM_039804928.1 mRNA upstream 240010 32376916 ~ 32403422 (-) True ptpn23a
XM_039804929.1 mRNA upstream 240755 32377661 ~ 32403421 (-) False ptpn23a
XM_039804666.1 mRNA upstream 288459 32425365 ~ 32434867 (-) True LOC120561540
TU103756 other downstream 608386 31516455 ~ 31519036 (-) True G77573
XR_005639672.1 other downstream 730919 31239787 ~ 31396503 (-) False LOC120561969
TU104072 other upstream 288491 32425397 ~ 32433657 (-) False LOC120561540
XR_005639667.1 other upstream 1453615 33590521 ~ 33597305 (-) False LOC120561932
TU104595 other upstream 1958737 34095643 ~ 34146296 (-) True G78245
TU104620 other upstream 1993137 34130043 ~ 34132106 (-) False LOC120561744
TU104706 other upstream 2355440 34492346 ~ 34493195 (-) True G78321

Expression Profile