RNA id: XM_039805815.1


Basic Information

Item Value
RNA id XM_039805815.1
length 2768
RNA type mRNA
GC content 0.43
exon number 11
gene id tnfrsf1a
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23836781 ~ 23843959 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTGAATTAAATCTACATTAATGTCGATATATGGACCTGAAGTAAAAGAGGTATCGCTCGGTGTGACAGTGGTTATCAAGcagcagcaacaacaacaacaacaacaacaaccaacaacaacaacaacaacaacaacaacaacaacagGTGGCCTCCAATGGATTGAGCTAAACCTGTAAGATATGGAGGGAGCTGGGCACAGAGGAAGATGGGACATAAAAGCCCCTGTTGGCACAATACTGCTCCTTATGTGCATGTTCATCCCCACTCTGACATTGTTACAACCTTCAGAGGAGAAGACGTGTCCACATGGCGACTATCTCACTGAAAAGGGAATTTGTTGCAACAAATGCCCTCCAGGTTTTAAGCTTGTAGAAATGTGTCATGCTACGGGTCACAGAAGTAACTGCACAAAATGTCCCGATCGGCAATATACAGACGAGATGAACTACTCCCGCAACTGCAGAAGTTGCAGACGCTGCAAAGGAAAGCATGACAAGGAGATATCATCATGTGAATATAACAAAAACACGATTTGTAAATGTGAGGATGGTTATTACAAGTCTGTTATTGACTCAGAAACATACGAGTGTCTGAGATGTTCACCGTGTGGACAGAATGAAAAGCCAAAACAGACATGTACACCAGAGAAAAAtactgtgtgtgaatgtgaagaGAACTACTACAAAGTCAAGGGCAAGTGTGAGCCCTGCAAGAATTGTACCGCTGAGTGCAAACATCAATGTCAACCATCAactcctactcctcctcctcctcctactcctACTACAAAAGCTCCTCTGCCTGAAGGTGTAAATCTTATCAAGATAATTGCTGGAGTTGCAGTTATGGCTGTGATATTGCTGGTGCTGTTGGTTCTCATCACCTACATTGTTACAAAACGGACTATCAAAAATAAGTTGCTGAAACCATACTGTCAACCCTCTGACGTCTCTGTGGACTCATGCGAGCGAGCCCTGTTCCACATCGAGGAACCTTCAGACAACATGAGTGTCAAGGCTCTTCCCCAAAGTCCTGTGAGTGAACAGGAACCATACAATCTGCCTGACTGTGTCCCCCTAGAAGTCAAGATCCCTGACCTGATCTACACGGTGCTGGATCTGGTTCCTGTGCTGCAGGTAAAGCAGCTGGTGCGTTCTCTCGGTGTGGAGGATACAGAGATCGAACAAGCAGAGATGGATCACCGATCCTGCCGCGAGGCTCACTACCAGATGCTGAGAGTGTGGGCTGAGCGAGGGTCACGTAGAGGTGGAGGAGGACGAGGTAGAATGCTGCACTCGCCCTTGTTGCAGGAGTTGTTGGAGGAACTGAGAAAGATGAACCTGGGACGGGCAGCCGAGGAGCTGGAGACAAAGTACGGCATTCAGTAGTTCTGCAACAAGTGCCAAGTGGAACAAGAAGCGCATGAAACCAAGTATTGTTCTCTTTAGAGAGTCACTCAAAGGCAGCCTCAAAGCATGACACGGTGCTacagcagttttatttttatcactCTCGTCCTGCCAAACACTTGCTGAAAAGACGGTCAAACTACTGAGAGCGACAGATCAAATGGTTCATAGAGGCAGAGTCATATGTATATGCAAATGTTTGCTTTTTAAAGGAATAATAAGACATTTTAGGATGGGACGACCAGCAAGAAAGGGAAtaagagtattttttttaaatacgctGTTTCTTTAGTATcactatactgtacagtatatctttGGAAATGTTGGGGAATATTTTATGATTTCATACTGGacttattactttttattataCAACATGCATTCATGATTTGAGTGTTTTCGACTGCATTTTGTACTAAATAGTATCTACTGTTGTACAAACTGTTTTATACATCGTGCCTACTCTATCATATGTAGTAAGGCCAATTAAGCTAATCTATTTCTGTTAGTGTCATCAGTCACCATTAAAAGGTGTGTTAAAACATTGCAgacattagttttttttagcacGGGGAAGTAAGTATTCATCTGTGCCATTAACTGGTAATGTTTTAATAGTAGTTCCTGGTTACATTGTTAAAACAGTTCTAGTCTTGTTTATTTAAATCTTATGGGACAGCACGGTGCAAGGTTGGCACTGCTGCCTCACAGCCAGTAGGCACTGCTGAGAACTGGATCACCGGTCCTTGCAGGACCTTTCTGGAGTCTCCCCGGGTTCGAGTGGGTTTTCTCTCAaagtgctccggtttcccccaccataaagacatgcgtACTAGGTAACTCCTGCCAGTGCCCTTATCATTAAGGGCTAATTAGTTGAggggttaaatgcagaggatGCATTCCTAAAATGTGTTACATACTtggcaaataaagaaaatagtattatataatattagaTAAAGAACAATACCAAAGCCAGGGAAGTCTGCAGTTCCTATTAGACCAGACCCCTGCTACTTATTTTACAGGCTTTTCACAGCCTCATTAGCGTTCTTTTGAACCCCATCATACAAGCATTATTCATTACTGTCAGAGAAAACAGGACACGCCTTGTTTCAGTCTGCCTCAGCCAAGTGAACTTTTATAATTCCAGTCTTGGCCTGCAGATTCAGTGATGAATCAGTCACTCTCAGACAGACTGAGGACGTGTCATTCCACAGCACTTTTATCCTACACTGAATTGTATAGCCAAACAGAACAATTTATTCACTGAGCAATCCATGTTGAGCAGTATATAACAGATTTTGTGATAATATCTGAACTTTAAATAAATCTGTCTTTGTATCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100857 lncRNA upstream 23432 23768240 ~ 23813408 (+) True LOC120563204
TU100761 lncRNA upstream 185347 23648327 ~ 23651493 (+) False casp2
XR_005639669.1 lncRNA upstream 203006 23631416 ~ 23633834 (+) True LOC120561968
TU100720 lncRNA upstream 265597 23568196 ~ 23571243 (+) False trpv6
TU100883 lncRNA downstream 39218 23883177 ~ 23884631 (+) True G75427
TU100973 lncRNA downstream 99534 23943493 ~ 23948403 (+) True G75483
TU100984 lncRNA downstream 128368 23972327 ~ 23975734 (+) True G75493
TU100985 lncRNA downstream 128368 23972327 ~ 23973124 (+) False G75493
TU101012 lncRNA downstream 183924 24027883 ~ 24031339 (+) True G75517
XM_039805816.1 mRNA upstream 7155 23823324 ~ 23829685 (+) True si:dkey-260g12.1
XM_039805817.1 mRNA upstream 7155 23823325 ~ 23829685 (+) False si:dkey-260g12.1
XM_039805260.1 mRNA upstream 14497 23808580 ~ 23822343 (+) True iffo1b
XM_039806139.1 mRNA upstream 28674 23803552 ~ 23808166 (+) True opn9
XM_039805259.1 mRNA upstream 34653 23797078 ~ 23802187 (+) True gapdh
XM_039805811.1 mRNA downstream 118 23844077 ~ 23858278 (+) True plekhg6
XM_039805812.1 mRNA downstream 118 23844077 ~ 23858278 (+) False plekhg6
XM_039804693.1 mRNA downstream 25678 23869637 ~ 23871714 (+) True mrpl51
XM_039807053.1 mRNA downstream 29950 23873909 ~ 23879415 (+) True LOC120563047
XM_039805749.1 mRNA downstream 77811 23921770 ~ 23937821 (+) True LOC120562185
XR_005639922.1 other upstream 68263 23768233 ~ 23768577 (+) False LOC120563204
XR_005639924.1 other upstream 69373 23767185 ~ 23767467 (+) True LOC120563206
XR_005639923.1 other upstream 72195 23764315 ~ 23764645 (+) True LOC120563205
TU100710 other upstream 342817 23491125 ~ 23494023 (+) True LOC120562612
TU100365 other upstream 934792 22900144 ~ 22902048 (+) False cnot3a
TU100879 other downstream 29957 23873916 ~ 23879415 (+) False LOC120563047
TU101013 other downstream 187431 24031390 ~ 24032445 (+) False atn1
XR_005639925.1 other downstream 210313 24054272 ~ 24054328 (+) True LOC120563208
TU101207 other downstream 591180 24435139 ~ 24436770 (+) False G75644
TU101208 other downstream 591180 24435139 ~ 24436819 (+) True G75644

Expression Profile