RNA id: XM_039805827.1


Basic Information

Item Value
RNA id XM_039805827.1
length 4195
RNA type mRNA
GC content 0.48
exon number 14
gene id galnt1
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 20903853 ~ 20960657 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCCTGTGTCCTGATAGAGGAGCATGATCGAGTGACGAGCGAAGGAGGAAGTGGGATCTCTGACGCTCCGCCCCTTCTGCTGGTGGAGCACCCTGCACATCTGACTAGAGACCTCTTTAGTCACTTGGACAGAATGCGGAGGTTCGCCTACTGTAAGGTGGTTTTGGCCACCTCTCTGGTGTGGGTGATGCTGGACATGTTCATTTTGCTCTACTTCAGTGAGTGCAACAAGTGTGATGACAAAAAGGAGAGAGGACTGCCCGGGAGACAAGATGCCCTGACCAGGCCGCGGGACGGGCCCGGCGAAGGGGGAAAGCCTGTGGTGATCCCTAAGGAGAACCAGGACAAGATGAAGGACATGTTTAAGATCAACCAGTTCAACCTCATGGCCTCTGAGATGATTGCTCTCAATCGGTCACTGCCTGACGTCCGCCTGGAAGGGTGCAAGAACAAGTTATACCCCGATAATCTTCCTCGTACCAGTGTGGTGATTGTATTTCACAATGAGGCGTGGAGCACACTGCTGCGAACCGTCCACTCCGTCATCGACCGCTctccacacacactgctggAGGAGATTGTTCTGGTGGACGATGCCAGTGAGagagatttcctaAAGCGGCCGTTGGAGCAATATGTCAGAAGGCTTGAAGTCCCTGTCAGAGTGGTGAGAATGGAGCAGCGGTCTGGACTGATTCGTGCTCGCCTCAAGGGCGCGTCCATCTCCACTGGCcagGTCATCACCTTTCTGGATGCTCATTGTGAATGCACAACAGGGTGGCTAGAGCCTCTGCTCGCCCGCATCAAGCAAGACAAGAGAACTGTAGTGTGCCCCATCATCGATGTGATCAGCGATGATACTTTTGAGTACATGGCAGGATCCGACATGACTTACGGGGGCTTCAACTGGAAGCTCAACTTCCGCTGGTACCCTGTACCCCAGAGAGAGATGGACCGCCGCAAAGGAGACCGCACGCTGCCTGTCAGgaCTCCCACCATGGCAGGCGGCTTGTTCTCCATAGACAGAGATTATTTTCAGGAGATCGGCACATATGACGCAGGCATGGACATCTGGGGTGGAGAGAACCTGGAAATCTCTTTTAGAATATGGCAGTGCGGTGGGACTCTAGAGATTGTCACATGCTCTCACGTGGGCCACGTGTTCAGAAAGGCAACACCCTACACTTTTCCTGGAGGAACGGGACAGAtcatcaacaaaaacaaccGACGACTGGCAGAAGTCTGGATGGATGAATTTAAAAACTTCTTCTACATCATCTCTCCTGgtGTGACTAAAGTGGACTACGGTGACATCACATCTCGCACGGCTCTGAGACAAAAGCTTCATTGTAAACCCTTCAGTTGGTACTTGGAGAACGTCTACCCTGACTCTCAGATCCCCAGACACTATTACTCCCTGGGAGAGATCCGTAACGTGGAGACCAACCAGTGCCTGGACAACATGGCCCGCAAGGAGAATGAGAAAGTCGGCATTTTCAACTGCCACGGCATGGGAGGCAACCAGGTATCTGaggatgaaaaaaacaacataaagaaacaaaaactgTCTAGGGATGCCACGGTTTTTTCTTACACGGCCAATAAGGAGATCAGGACAGATGACTTGTGTCTAGACGTGTCCAAACTAAACGGACCCGTCATGATGCTCAAGTGCCATCACCTCAAAGGCAACCAGCTCTGGGAGTACGACCCTGTGAAGCTGACCCTGATCCACGTCAACAGTAACCAGTGTCTGGACAAGGCCAGCGAGGAGGACAGCCAGGTGCCCAGCGTCAAAGACTGCTCACCCACACGCTCCCAACAGTGGCTACTCCGCAACGTCACACTACCAGAGGTCTTCTGACCACACTCTGCACactcccaaacacacacactctcacacacacagcggcCCAGGGTAAGCAATCAGGGTAACAGACGTGTTTATTAAAATTGGGCACAAGGAAAGGAGAGACTTCCCATGAGGGGATttcgggaagagaggaggacGGATTGGACGGTACTACCTCTGCCAGAGATAAGGAGGGAGGAGTGTGTTTGACCCTCCTCGGAGTGACAGAAGAGGAAAGACTCTGTCTAGGAGACGATGGCTGTTGTTTTAAGGAGATTTTAACCGCAGAGAGTGACTCACTCGCTGGGCGCGAATTATGAGACTGGCCAGTGGAGTCAAGGTTTGCACTCACAGCTTCCCTGGACTAAACAGTCCACCCCTCATCTCATCAATTAACGTTTACTCACTGCCTCTTATGAGAGTGTGTGCacttacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtactctgagATGAATGTATGCTTTGAGAAGGGGGCTGAATTCCTtgttgatttctttctttttttatttaattttttaatgaattttgaaaatgaactcttatgaagaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtgtggttcAGAGCCCCTCCTACAGTCCTGCAGCAGTGTATGTCTCCCTCTGGTGTTTGTCCTCGGCATCTCATCCTACAGGCAAGCCTCCTCGCTGAGGAATTTCGAAGGGCCCATTCAAagggcacatttaaaaaaaaaaaaaaaaaaaaacaacaggacCGAACACGAGGACCCGACGACGTCTGCCATCCGCAGAGATCTAGAGATAGAGAAATATGTTTGTGATATCTTGAGATTTCTATGTCAAGTTTTTACAtggctttgtctgtttttactGTGAGAGTGCAACAGAGCAGTAACCCtagtctgtctgtccgtctctgTTGTCTTTAAAGATGTTTAACATAGagcttacagacacacacacacatacacagaggacTCTGCATATGTAACTGATATTCACTGCCTAATGTAGTGTGTTAAACTATAGGGAACTCCCCCATAAGGCACtacatagtcacacacacaccctgtatACATATAGGAAAGGCTGCACTAGCCTGATACTTTAATCCATATTGTCATATCTTCTTCTCAATAACCTCTTAAAAAATACACTCCAAGGGCTTCTTTCCTTCAGTGGAGTGtgtggacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgagcatGTGTCTTCAGTACTAATCCCCAGTCCATCAGCTCCCTGTTCACTAGGACAAACGGCTCTCAGATTCCTCGCTGTTGGACAAATAGAGCCCGTAGCGTAGACTGACGTCAGATCAGCATATCTCTGCGTCCGTTGTACAAAAGAGCAAAagctgcttttattttctaaacATAGCCGAGTCGCCGCACTCTCCTGAGGACATATCTACAGTAGGAAAGGAAGCCTGGAAAGCTGTTGTTAGAAAATCAAAGAGACGTCGCTGAGGTGAGTAAGGAGACTTTATCAGAGACAGAATAATAATTGTAGAGGGCTGAAGGGAGTGAAAAGATGAACTGTGGATTACAAcgagcgcagcagcagcagacatatCTTAATCCATAACTACATATCTCATTGTGCAAGCTCACCTGCAGTATTTCACTATTCATATCTCAGTGAGCCAGACAGCTGAACAGTTACATCAGTatgtcattttcatttcaacCATTATGCTTtctttattcagtttttttgtaTCACTCCTGCCAATCAGAGTAGGAGAGATGATTTCATAAAGGTTGTAACCATTTGAGGAGGGGTTTACACTGGTTCATCTTTGTTTTGGACACGATAGTGACAGGAGGCCGTCGACTAATTTCATGTCGGAGCAAGTGACTGCGTAGGGAGGATGTGAACGTTTTTTGATTGTGAGACAGAGGGAGTGTAACGATTGTTCAAAttttggtggtggtgggggtttGAGGGTTTGACGTTAACGGACATGTCTAGGCTTCCACACTGAGCTGATCCAAatgtagaaaataaaagtgaaaaagttTACAGAACAATACGAGGAAAA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99243 lncRNA upstream 11068 20893139 ~ 20893942 (+) True G74207
TU99244 lncRNA upstream 12355 20891684 ~ 20892655 (+) True G74208
TU99241 lncRNA upstream 63241 20840560 ~ 20841769 (+) True G74205
TU99240 lncRNA upstream 68262 20832323 ~ 20836748 (+) True G74204
TU99160 lncRNA upstream 290303 20607340 ~ 20614707 (+) True G74145
TU99280 lncRNA downstream 115654 21076311 ~ 21222895 (+) True G74230
TU99289 lncRNA downstream 140513 21101170 ~ 21156912 (+) True G74234
TU99287 lncRNA downstream 189732 21150389 ~ 21152512 (+) True G74233
TU99348 lncRNA downstream 282572 21243229 ~ 21243567 (+) True G74274
TU99365 lncRNA downstream 328514 21289171 ~ 21289375 (+) True G74286
XM_039805369.1 mRNA upstream 263159 20631458 ~ 20641851 (+) True LOC120561989
XM_039806762.1 mRNA upstream 299845 20600323 ~ 20605165 (+) True glipr2l
XM_039805895.1 mRNA upstream 429456 20448227 ~ 20475554 (+) True si:dkey-12j5.1
XM_039805896.1 mRNA upstream 429456 20448227 ~ 20475554 (+) False si:dkey-12j5.1
XM_039806791.1 mRNA upstream 524927 20368104 ~ 20380083 (+) True LOC120562868
XM_039805669.1 mRNA downstream 39614 21000271 ~ 21001642 (+) True LOC120562142
XM_039805670.1 mRNA downstream 47356 21008013 ~ 21011414 (+) True sec61b
XM_039806524.1 mRNA downstream 120229 21080886 ~ 21103601 (+) True nr4a3
XM_039806523.1 mRNA downstream 122856 21083513 ~ 21103601 (+) False nr4a3
XM_039806831.1 mRNA downstream 146181 21106838 ~ 21117093 (+) True stx17
TU98645 other upstream 1255499 19646975 ~ 19649511 (+) True G73779
TU98340 other upstream 1746015 19148613 ~ 19158995 (+) False G73570
TU98343 other upstream 1746015 19148613 ~ 19158995 (+) True G73570
TU98057 other upstream 2158335 18744662 ~ 18746675 (+) True LOC120562824
TU98024 other upstream 2251373 18652411 ~ 18653637 (+) False LOC120562819
TU99269 other downstream 47376 21008033 ~ 21011371 (+) False sec61b
TU99513 other downstream 442470 21403127 ~ 21404603 (+) False crot
TU99582 other downstream 638398 21599055 ~ 21603230 (+) True them4
TU99801 other downstream 808891 21769548 ~ 21770286 (+) True G74633
TU99947 other downstream 1171921 22132578 ~ 22136234 (+) True LOC120561539

Expression Profile