RNA id: XM_039805834.1


Basic Information

Item Value
RNA id XM_039805834.1
length 4071
RNA type mRNA
GC content 0.50
exon number 12
gene id brd2b
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 30186346 ~ 30205056 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCGCCATTTCGTTGCGGAGTTGTTTGGTAGTCTCTCAGTGGAAGTGCAGCGTCAACAGTGGTGGAAAAATTGGATTGTAATAACACTCCGCCTTCAGCCCGATGGAAGCGGCCGTCAACCCGCATCACGACAGCTCTCTGGTCGGGTTGTCCAGTGGCGGGATGGACCAACACAGTAGTTCGGGCAAACGCATTCGCAAGCCCTCGTTGCTGTATGAGGACTTTGAGAGCCCGTCTCTGCCGCACACGATGCCCCAGGGTCCTCCCGTCCCACCGCAGCCCCCAGTGAAGGATCCCAGCCGGCCAGGCCGCATGACCAACCAGCTGCAGTATCTCCAGAGGACCCTGATGAAGTCACTGTGGAGGCATCACTTTGCCTGGCCATTCCATGAGCCTGTGGATGCCTACAGGCTTAACCTACCGGATTACCATAAAATTATCAAACAACCCATGGACATGGGGACCATCAAAAAGCGTCTGGAGAACAACTTCTACCGCAGTGCAAGTGAGTGCATTCAGGACTTCAACACAATGTTCACCAACTGCTACATCTACAACAAGCCGACAGACGACATTGTGCTGATGGCTCAGTCCTTAGAGAAGATCTTTCTCCAAAAGGTGGCCCAGGTGCCCCAGGACGAAATTGAGCtgcctcctccagctcctcgaAGCAAGAACAGCAAGGGAAGAGGTCGCACATCTAACTCGAGGGCTCAGCAGGTGCCAGCGGTGTCCCAGTCAGCCTACTCCCCTTCTTCCTCTGACACTGGGGATTCCATGCTGGCCAACTCTCCCCAGGCTGTACTGACCAAAAGCCTTCCCCCAGCCAACATCATGGGCCTGCCCCCTACACAGCCCACAACCAAGAAAAAAGGTGTGAAACGTAAGGCAGACACCACCACCCCCTCCACCATGGGCCTGACTGTGGGCATGTCCGGAGCAACGCACATGGTGGGCTTGGGGAAGGGAGGCCACGGGGGCCAGGTCCACGACACCTCCATGCACACCATCTCCTCCATGGGGGGCATGAGCTTGGAGACCCAACCTGCAATGGGCCTGGTCAGGAGCCCTGGAGGTCCCGTCCTGCTCCAGCCAATGATGGCAGGCAGTGGACGCAGAGTGGGCAGCGGACGCCCCATTAAACCCCCCAAGAAGGACTTGCCTGATTCTGTCCAGGCTCAGCCCTTGAGGAAGGGCAAACTAAGCCCTCAGCTGAGGTACTGTAGTGGGCTGCTGAAGGACATATTGTCAAAGAAACATGCTGCGTACGCCTGGCCTTTCTACACCCCCGTGGACGCAGCTGCACTGGGACTTCACGACTATCATGACATCATTAAGTGTCCCATGGACCTCAGCACCATCAAGAGGAAGATGGACTGTCGTGAATACAGGGACGCTCAACAGTTTGCTAGCGATGTCCGACTCATGTTCTCCAACTGCTACAAGTACAACCCACCTGACCATGATGTTGTGGGCATGGCACGGAAGCTGCAGGATGTGTTTGAATTCCGTTTTGCCAAGATGCCAGACGAACCACATATGGATCGCACAGCCATGTCAATGAGTGGCCATCagacatcctcctcctcctcttcttcctcctcctcgtcctcatcTTCCTCCACCTCTGAGAGTGAGCCCAGCAGTGAGAGCGAAGAGAGCGAGAGCAGCCCGAACTCGGACAGCGAGGAAGAGCGAGCACATCGCTTGGCTGAGTTACAGGACCAGGTGTGCACGCAACTCCGAGCCGTGCACGAGCAGCTGGCTGCCCTCTCCCAAGGCCCCATCGTCAAGcccaagaagaagaaggagaagaaggagaaaaaagagaagaagaaaaagaagaagctggaaAAGCGAAGTCGAGTCGTCAGAAGCAGAGCTGGCTCTGAGGAATGGAAAATGCCCGGCAAGATCCTGAAAACCAAGTCTGCCAGAGCAGGCTCGCAGCCCAAGAAGAGCCAGGGGAAGAAGAGTAACAAGAACCGCAAGGCCACAAAGAAGCCGTTCTACCCCCCACCGCCCACTTCCATGCTGCCACACTACGactctgaggaggaggaggagatcgTGCCCATGTCATACGATGAGAAGCGCCAGCTGAGCCTCGACATCAACAAGCTGCCGGGCGAGAAGCTGGGTCGTGTGGTCCACATCATTCAGTCCAGGGAGCCTTCCCTGAGGGACACCAACCCCGAGGAGATTGAGATTGACTTTGAAACGCTCAAGCCGTCGACACTGAAAGAGCTGGAGCGCTATGTCATGACCTGTCTGAGGAAGAAGCCCCGTAAGCCTTACGGTGAACAAGTTGCAGCAGGAAAGAAAGGCGGTGTTGCCAAGTCTAAAGAGGAGCTGACTCTGGAGAAGAGGAGGGAGCTGGAGAAGAGGCTGCAAGACGTCAGCGGGCAACTCAATTCTGTCAAGAAACCTACGAAACCTAAAGTGGAGAAgcccagcgctgtggagactCACACCCAGCCCTCACGCCTCAgcggcagcagctccagctccgactcatcttcctcctcttcctcctcctcgtcctcagACACCAGTGATTCAGACTCTGGTTGAGATCCTTAGCACCGGCTGAGAGAGAAAACACTAACATCTCAGGGACTTGGGCTGGCCCAGGACACAACACACCCTGAAACAGTAGTGGGCTGAGACAAAACACTCCGAGTGGACTCTGAAAAATGTTTGGAATGTGGGATAGAGGGATGGGAAACGTCTCTGTGGATAATCGTAGAACCCAAACACTAAATGCCTTGgtttccccctcctctccctttTGTAAATACTTGTACAAATGTATGTTTCTTTTATAAAGAAGAATTTTATGGTGATCCCCCAAAGAGGGAAGTAGAGTACTAAAAATAGGATGTGGAAAGACGGGCCTTACTCCAAATGTGCTTTGGCTGGCCTTGCGCTGTGTCCTCTGTGGTGAGGGAATGGaaaagtgtttatttatttgtttttgttcaccCACATTTCCTCAGACGTTACTGGAATTTGAACCAGCAACCATTTTGGTCACAAGCCTTGCTTTTCTAACATTTGGCCTTCTGCCACGCTTAGATTTTTAGATTGTCCCCTAGACTCAGCCTTAATCATCCTGATTGTTAATAACAGTTAGATTATTTGGGAAAATACTATATTGCTGCAGTTTAATCTCAGTTTGACATTGAGCTTTATGCTGCAAGTTTATGCAGTCTGTTTTACAGCATGTACTGTAGTTCttgttttttgaaaacaaaGTGGGTTCAAAGTACAGTATAGAAATGGCTtaacatactgtaattacaaaGTTTGTAATTAAGTAACATACTCTCTCTGTTTGTATTGATTTTGATGGCTGCACTATTCTCCTATAGTCCTCAAGCCATTTTTAGACTGCCAGTCTTATAAATATGACACTAATGGAAGTCCTGTCTTCAGTGTTTTTAAATCAGCGCTTCACTGTTGGACTTCGATATTGTTCTCAACATTTCTCTTCATTACATCAAACTGCAACTGAAGTGTGCATCTCTTTCATAAGAGCTGAACACACATGCTGAATGTTATTGGATATTGGTGCAGGTTTCTGATTTCCACTTTATTCTCCTCAACATGTGAAGTATTGCATTACTGTTTTTTGAAGACATCAGCACTTAGAAACTCAGTGACTTGTTTCTAAAAGAAATCGTTCAGCTGTTCGGCACTTACTGAAACAAATGGTGTTGACTGAGTAACGCCAcaagtttcccataaagagaccACAAAGTCCTCATAGCCCAATGCATAGTTGAAGCTGTTGTTGAATGTTCAGTAAAGAATATATGCTTGTATATACTTAAACTGTATTTGCTGTTGCACAAACTATTGTATTTCTGCTGTTcagtctttattttattttcagttatcTTGTTTCCTTTTTGACATGCTGTTAATTTCTCATTCCAGTTAATGGTCTTAGTTGTTTCCTGAAGAGAGTTCACATGAGCATCTCTGCCTCTGGTCAAGCAGGTCGTTGCCTCTCCGACGCATACCTTTCATTTGACAAGTGTGTTTATTAAACTATTGTCTTCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639689.1 lncRNA upstream 65250 30118008 ~ 30121096 (+) False LOC120562092
XR_005639690.1 lncRNA upstream 65250 30119598 ~ 30121096 (+) True LOC120562092
TU103297 lncRNA upstream 65257 30118008 ~ 30121089 (+) False LOC120562092
TU103292 lncRNA upstream 76801 30102763 ~ 30109545 (+) False rgl2
TU103245 lncRNA upstream 287593 29894234 ~ 29898753 (+) True G77198
XR_005639712.1 lncRNA downstream 11692 30216748 ~ 30218603 (+) True LOC120562235
TU103340 lncRNA downstream 155102 30360158 ~ 30360530 (+) False LOC120562443
TU103334 lncRNA downstream 193220 30398276 ~ 30402704 (+) True G77260
TU103458 lncRNA downstream 482282 30687338 ~ 30731600 (+) False rab5ab
TU103534 lncRNA downstream 771685 30976741 ~ 30977081 (+) True G77399
XM_039804802.1 mRNA upstream 4204 30170014 ~ 30182142 (+) True tap1
XM_039804798.1 mRNA upstream 48777 30136281 ~ 30137569 (+) True LOC120561633
XM_039804794.1 mRNA upstream 52810 30125926 ~ 30133536 (+) True pbx2
XM_039805562.1 mRNA upstream 77208 30073937 ~ 30109138 (+) True rgl2
XM_039805688.1 mRNA upstream 374557 29780179 ~ 29811789 (+) True ntrk1
XM_039805838.1 mRNA downstream 121 30205177 ~ 30212236 (+) True LOC120562234
XM_039805839.1 mRNA downstream 121 30205177 ~ 30212236 (+) False LOC120562234
XM_039806155.1 mRNA downstream 7583 30212639 ~ 30216695 (+) True LOC120562442
XM_039804935.1 mRNA downstream 13941 30218997 ~ 30223524 (+) True LOC120561719
XM_039806156.1 mRNA downstream 146439 30351495 ~ 30360588 (+) True LOC120562443
TU103301 other upstream 61708 30123702 ~ 30124638 (+) True G77239
TU103032 other upstream 773933 29404008 ~ 29412413 (+) False G77028
TU103024 other upstream 796454 29384135 ~ 29389892 (+) True LOC120562177
TU103005 other upstream 856088 29328789 ~ 29330258 (+) True G77009
unassigned_transcript_354 other upstream 1339563 28846712 ~ 28846783 (+) True trnaa-ugc_7
TU103600 other downstream 929773 31134829 ~ 31136146 (+) True G77447
TU103881 other downstream 1771262 31976318 ~ 31979909 (+) True G77682
XR_005639638.1 other downstream 2200077 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other downstream 2200077 32405133 ~ 32421472 (+) False LOC120561717
TU104140 other downstream 2895357 33100413 ~ 33101534 (+) True G77888

Expression Profile