RNA id: XM_039805856.1


Basic Information

Item Value
RNA id XM_039805856.1
length 5673
RNA type mRNA
GC content 0.47
exon number 8
gene id sphk2
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22838405 ~ 22849527 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCTTATCGCCATTGGACTTCCGCTCCGCCGCTCAAAGCTGCCGCTGCTGCGTCTCCAGACACTTCCTGCACGGAGCTACAGTTTTCAGAGCAAGCGACGCTCGTCGTGTGGGGGGAGACAAGATGAGGAATAAAGATCTTTGGGAGGGAACGTGAGGCTTGACTCAAGGACATTACCATGACATAGACTAAGAGTCCACCTGGAACTGTCTCCTTGTTTGTCTTTTGTTaggtttctgtttttattttttcgttGTCTAGTCTCCAACTGTCTTACCTGGTGTTTACACTCTCCTTGTGGAGAACAGATAATGAAATAGTATGCAGGAGTGTTTGTTTGCATGAAACTTTAATGTATCGCACTACTGTCTAGAGGACTGACCTAGTCACTCCTCGTGTCAGCCTCCTATATCACAGAGATTAAAGATAGCAATAGAGGTATCAAAGGTCTTGAAAAAAGTCTGCACTTATCATATCATTGCAGGAATAAATTACATTTCGGCCAGCACTTTTCATCCAACACACTATACCGAATTCTTTACTTGTGCtttaatttaattgttgtaGCCTTCTTGTTTAAACAAGGTGCGATTGTTTTTCTTATTCATACTTAATGGATCTATTTTTCAATGCAACCAAGAGTTTTAGTTTTGTCCATTTGTGTAATTATTTAAAGATGTATTATTAATGTCGAGGAGCTGCTCAGCTGCCTGATATTGTTATCGCAATAGGCGGCTTTAAGTTGTAATgtaaacattctttttttttttacttatgcAATCTTTGTGAAGAACAATTTTGTTTGAATTACTTATCTTGTAGTgggaaaatatacatttttaagttttattgTCTTTGAATATGTTGAAGTATTGCTCATTTTTCCACTGGCAGTAAACTGTAGAAGCTGATGGCTCTTCAGATCAAACTGATGGGAGCTTTCTAACTGTGACGCAAAGACTGATCTTAAGCAGTTTCCATCTTCACTGGATAAATACTCTAAACAGAAGAACCTTTGAACTGGAGTTTTCTTCTCAAATGAAGACATACCTCTTTAATAGATGGACGGAAACAAACTAAgagcagattttttttgtgtgacatTGTCTCTTGAATCCAAACACTGAAGAGGGAGAATGATTTTGAGGAGATTTCAGGGATAAAGCTCTCAGACTGACATTCAGATACATTTGGATTTTCCCTGCAAATCGTACGAGAGCTGCCGGATTCCACAAGCCTCTAACTGTAGAAAACACGACCCTAAAGCTTGTTAAACCAACTTTTTCCTGTAAAAGCCTTGTCCGCTTCAGCAGTGAGGATGCGATCTCCTGAACCATCTTCACCTTCCACAGCAGAAGCCCTCCTTCATGGCCAGTTTGCCAGTTGGGATTCaggcagcaacagcaacaataacagctgccccaacagcCCTGGTGGTCCGGGGAGACACTCTCCCGCTGCCTCCCCTACTCCGGCTCCAGCCTCCAACTATGCCTTGACCCTCACCCACACCCACATACATATTCAGCGGCTGTCACCACGGCCGGGGAAGGAAGCCCGTCTCTTGCTGCCTTTATCAGAGCTAGTGGGGTGCAGCTGCCCTCGCGCCCCTGCGCCCCCTCTCCTGGTGCTGTACTGGTACCCGCCAGGCAAACGACGTAAAGGGGTGTCTCGGCGCAGGCAGGTGAGGGCCTACCTGGCAGAAAGCAGGTCTGAAGCTGAGAGGTGGTCAGCTGCTGTACAGTGTCTACTCAGAGGTGTGACTGTCACTGCTGAAacagAATTTTCAAGAAGTCTGCTACCTCGTCCCAGGCGACTACTGTTATTGGTCAATCCCTTCAGTGGGAGAGGCCAGGCAATGCAGTGGTGTCAGACCCATATCCTGCCAATGATCAGAGAGGCCAACATCAGCTACAACCTTATACAGACAGAGCGTCAGAACCATGCCAGAGAGCTTATCAGAGAGTTATCGCTCCCAGAATGGGATGGCATCATCATTATCTCTGGAGATGGCCTGCTGCATGAGGTAATTAATGGGCTGATGGAGCGTCCTGACTGGGAACAAGCTATAAAAACACCTGTTGGCATTCTTCCCTGTGGCTCTGGGAATGCACTGGCTGGCTCCATCAACCACTATGCAGGGTATGACATGTGCCTTCGGGAGCCCCTCCTTTTGAATTGCTGCTTTTTGATTTGTCGAGGCGGTGTTCGACCGATGGACGTGGTCTCTGTGACAACAAGCCCTTCTCCCTCCACCAACAGTCGTACTGCAGCACCCAGGAGactgttttctttcctctctgttgCCTGGGGCTTTGTGTCCGATGTGGACATTGAGAGTGAGAGGTATCGTGGCCTGGGCTCAGCTCGCTTCACCCTGGGTACCCTGGTGCGCATAGCTTCTCTTCGATCCTACAAGGGTCGTCTGTCCTTCCTGCCTCCCTCTATTAGCGCCACATCACCAGACGCCACACCTCCTCCGCCAAGGAGACCCCTCTCCCGCAGTATCACAGAAGGCCTGGATGGCTTCTGTCGAACGCCCATCCATCGCACCTGCTCTGACATGGGCATCAGCGAACAGAGGAGCCTGCGTAGGggtgagggagagagggaaaaagaggagaggcagagagaaagggACAGAAGAAGGGAGAGGGCTAGGGGAGGAGGAACTGGCGTGGTGAGGGCAAGCAGCCTGGCagaggacagggagagagaggtagagatgGAAGCAGAAGAGGGGAGATCAGGGACATGTTCAGAGAGTTCAGAATCAATTGAAAGGGAAGACTGCAATATGGGAAAGATAGAAAGGTTGGCTGGGATCAAGGATGAGAGGGAAGATGAGGGAATTGTAGAGCAAGACTCCagtgagatggaggaggaggatagGGGGAAGGATGGGGAAGGCAGTGGTGGTTCtacagagggggagagagcgTTGCATGCAGTAGAGCCGGGAGAGAGCCGTGGGGTAGACATGGGGCGAGAGGCAGATGAAGAGCCAGAGGGTTACCAAGATGGGCTCCAGAAAGCCAGACAGGCACGGAGAAAGAATTCAGCCCCTTCAAGCCAGATAGCCAACGCTCTCTTCAACCAGCCTCTCAGTCGGGAGGCTGACACAGATTCGGGCACTTCATACGGGGTAGAGGACATGGATCTGAATGGAACCTACTACCAGGAAGAACCCTACCAACTGGACGTTGCTCGTGAGCGATCTCTCACCATCTCCTCTCCCTTTCGTCACTCACCCTTCTCTAACAAGCCCAAGACGCTGGACCAAAACCAGAACACCTCCCGGCCGaggcccctctctctcctccagcaCTCCCACTCAAACTCCCTCCCCCCTAAACTCCcttccctctccctgtctctttctccgaCACCCCCATCTTCCCCTTCATGTGCCTCCCCACACTCTTCATCCTACCTCGTCCCCCGTCCTAACACCCCAAATTCTACTTCGCCCTCACCCTCTCTACGCACACCGTCCTCATCTTTTAACTTTGACATTGCTGAGCCAGCAGGACCCCTAAAGAACCGTCCTTTTGTCTCACTGCCTTTAAATATCCCTCGGGATGACTTGTTACCTCCCCTCGACCAACCCCTTCCCACCAGAGACTGGGTCACCATCGAAGGGGACTTTGTCCTGGTCCTGGCCCTTTATCAGTCTCACCTCGGGGCTGATCTTCATGCTGCACCCCAGGCCAGGTTCGACGATGGGCTGATCCACCTGACCTTTGTGCGGGCGGGGATCTCCAGAGCCACTCTACTGAGACTGTTCTTTGCCATGGAAAGAGGAAACCACCACTCCGTCAGCTCGCCTTATGTGAGCCATATTTCCTGTAAGGCCTTCAGGCTGCAGCCTCTGTCTACACGGGGGACACTCACTGTGGATGGAGAACTGGTGCCCTATGGGCCTCTTCAAGCACAGGTTCATCCTTCCCTGGCTCGTCTCATCGTTGGTGACTCTGGAGTGAAGATTACCAGATTCTAATCGGGTGGTTGAGCTGATTGACAGATACAGCACTATACTGAATTATGTAATCTCTGCTGTCATCTATACTCTGAAAGAGCGTGGAGTATTAGAGAGACTTAAAATAGCCTGGATAGCAGAAACTGCTTTTCTGGGGTTTAATGAAAGGGATAACCCACGAGCCATGCATCATTGGAGCATGACTGCAGGGATTAATAGCAAATTTAAAAATGGATGAAAAATGCGCCTCATTGCACAGTTGTCGGATTACGCTCAGCATACCCTGAGAAGCATGAAAACTGCACAGCCTGGGATAGTAAGAGGGAAGAACGATCGAAtgtttatggagttttttttgtgtgcaggtGCATGTGTTGGATGTATACATAGAGGTATGCATGCAGAGAAGCACTACCTGAATTTTGCCTTTTAATGATAGAAAGAAATCAGATGAAAATCAGAGAAGGTTTTTCTTAAACATGAAATGCTATAAAATATACATTGAGATTCACTTGGCCCCAACCCTTTATCTTTAACCTGCTCTCTATGTCCAAACTTCCGTCCATGAAAAGAATGCCTTATCTGACACTGGACAGTACAGTTGTACCTTTGCCCTTACTTGTTCTTACTTATATaagaaacccaaatatattcaatcTCTGTCCACCTATCATAGTGTCCGTCCACTACATCAAAGCAAAGCTACGCTTATATACTTAGACATACTGGTAGACTCACCTACCTACTGTTATCTTTGAGCACACTGCTCTCCACTGTTTAAAGCATCAGTCGAGAAAAATATGGACACTTTAATGACCATTTTGTTCATGCAAGTTCCTCAATGTAGTGCAGCGAGATTAGCTTGTCAGGGTCATTACATAGTAGGAGCAATGGAACCGTTGAACGGTGACCATTACTGACATTTTAGCCAGTGGATGCACGATTATGATGTCAATGATATCACACTTTGCAACATATTGAACATACAAATGTCTGAACAAAGCAAGCTTCTTTGTCAGTGGTATAGTAATTAGTGCATTTTGTACAATAACTAGAGTTGAAGCAGCACAGAAAATCACAACACTAGAATCTATAGTAACTTTTAGATACATCTACAGCGCAATGCAGAATCTGATGCTTTGTTCTAGAAATGGGTGCGCTAGTATTAATAGCCTAgtctatatactataataaatgGATCACATTACATTCCTAGCCTGAAATTAATTAAATGTCTGAATTTAAACACTCAAAGCTTTTGAAAGGTAGGAGTGACTGACCAGGGCACAACATTAAAATCCAGCTATGTGTTATCACATCAGACTTGTGATCAAGAGATAAATCAGATGGATGTTAAACAACTTTCATTGTGAGAACGTATCCAGCATCAGAGCTGATCTGGTCAAATAAGTGATAGATTGGGTTTTACATTTAATTCTTGAAGCCCCTTCTTGGAATTGTCATGTCTTATAAGATTAATTTTTGTAATGTTATAATAAAACCTGCTGATATACTTGGTCTGGATAAAGGATAAATCATTAGCATGTGCAGTGTATCAATCAGTAGGATCATGTGCCCACTGCTTGGGTCATCATCAACCTACTGTATGCTTTGGTCATGCCTGGACAAATCAATGCCTTTGTATAATAAGCCTGTACATTCTGGCTGTTGATGATAAACTGTTAAAACCTGA

Function

GO: NA

KEGG:

id description
K04718 SPHK; sphingosine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100087 lncRNA upstream 18352 22814044 ~ 22820053 (+) False myh14
TU100074 lncRNA upstream 133102 22704872 ~ 22705303 (+) False LOC120562539
TU100051 lncRNA upstream 212452 22623215 ~ 22625953 (+) True arnt
TU99986 lncRNA upstream 525890 22264939 ~ 22312515 (+) False rusc1
TU99992 lncRNA upstream 582927 22255271 ~ 22255478 (+) True G74769
TU100374 lncRNA downstream 69225 22918752 ~ 22920103 (+) True G75042
TU100379 lncRNA downstream 75065 22924592 ~ 22925155 (+) True G75045
TU100406 lncRNA downstream 133365 22982892 ~ 22987322 (+) True G75065
TU100410 lncRNA downstream 144893 22994420 ~ 22994706 (+) True G75069
TU100419 lncRNA downstream 167280 23016807 ~ 23018595 (+) True G75077
XM_039807061.1 mRNA upstream 606 22832356 ~ 22837799 (+) True rpl18
XM_039806580.1 mRNA upstream 8050 22827807 ~ 22830355 (+) True si:ch211-120k19.1
XM_039805742.1 mRNA upstream 21442 22785580 ~ 22816963 (+) False myh14
XM_039806496.1 mRNA downstream 2831 22852358 ~ 22864843 (+) True cyth2
XM_039806043.1 mRNA downstream 28504 22878031 ~ 22887878 (+) True zgc:158689
XM_039806044.1 mRNA downstream 43572 22893099 ~ 22898869 (+) True tfpt
XM_039804760.1 mRNA downstream 50562 22900089 ~ 22911520 (+) True cnot3a
XM_039807055.1 mRNA downstream 118911 22968438 ~ 22982779 (+) True rbfox1l
TU100082 other upstream 18352 22814044 ~ 22820053 (+) False myh14
TU100065 other upstream 170861 22660479 ~ 22667544 (+) False LOC120562537
TU100045 other upstream 215321 22616972 ~ 22623084 (+) False arnt
TU100052 other upstream 215321 22616972 ~ 22623084 (+) False arnt
XR_005639804.1 other upstream 252833 22559945 ~ 22585572 (+) True celf3b
TU100365 other downstream 50617 22900144 ~ 22902048 (+) False cnot3a
TU100710 other downstream 641598 23491125 ~ 23494023 (+) True LOC120562612
XR_005639923.1 other downstream 914788 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 917658 23767185 ~ 23767467 (+) True LOC120563206
XR_005639922.1 other downstream 918706 23768233 ~ 23768577 (+) False LOC120563204

Expression Profile