RNA id: XM_039805863.1


Basic Information

Item Value
RNA id XM_039805863.1
length 1999
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC120562244
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 5336214 ~ 5467090 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGTACAGTAGGTGGCGGTATGCACCTAAAAGTTGTTTGCAATCCGCCATTAaataagagaagaagaagcagcagcagcagcagcagctgctaaAAGATGCTCGTCTTTCAGtATTCGGTGACTGAGACTGAGTCCTAAAGGCACAGTGGAATACGGTGGCGGCAGCAGCAGGCATCAAGCTTAGATGAAGGATGAAGAGCCCGGTGCACAGATGCAGGGATGTGGAGCGCGGGCATGGGCAGGGCAGGGCTGGGGCCAACTGCCTACAGGCCGAACAGCGCATCCCCATCTCCAAAGACGTCATCACTTCGTCCTCTGCCTCTGCTATGTGGTTCATCAGGGACATCTGTGGCATTGTGTGCGCCGTCATCAcctggctgctgctgttgtaTGCAGAGTTTGTAGTGCTGTTTGTGATGCTGCTGCCCTCCAAGAATCTGATGTACAGCATTGTAAACGGGACCCTGTTCAACATTCTGGCCTTCCTTGCCCTTGCCTCACACCTCAGGGCTATGTGCACTGACCCTGGGGCAGTGCCAAAAGGGAATGCTACTAAGGAATACATAGAAAGTCTTCAGCTGAAACCAGGGCAGGTGGTCTACAAATGTCCCAAGTGCTGCAGCATCAAGCCTGACCGAGCACACCACTGCAGTGTTTGCAAACGCTGCATACGCAAGATGGACCACCACTGCCCCTGGGTCAATAACTGTGTTGGGGAGAACAACCAAAAGTATTTTGTGCTTTTCACAaTGTACATTGCACTCATCTCCTTCCACGCTCTGCTCATGGTGGTCTTCCATTTCCTCTACTGCTTTGAAGATGATTGGACAAGGAATCGAGCGTCTGAAGGGAGAGACAGGAAAGTGGGGGAAGTTGCCATGTTGGGAAGCCATGCAGATGGCGTTCGGTGGCCCATTCTCTTTATCCTGGTGCAGCCCCTTTGCAGGGCTAAGCTGCAAGAGCCTTTCAGAGCATGTGCCCGTCCCACAGGGGGAGATCATCGAAGAGGACGTCATAGAGATACCACTCAACTAGCACTGCCTGCATTCAGGAAACCCTTTATTCTCAGTCTGGCAGTGCTTCTCTACATGCAACATTTTGAATTGGTGGACTTTATCAGGGCTTTCTAAATAGTGAGACTCCACCTGgaattttaatttgtattttttatctcaaagacttatatatcttatatatgtgAAAATATCACGCCTACTTTCTTTTCCAGTGTTAATGTAGCTATTTTGCAGGGTGTATACTTACAGTAtacttacattttgtgaatatCTTTACCTAACTAGCAACttggtttttttaaataaataaagtacaataagtaaataatatatataaatgttctgccattgcacacacaaaaaggaaGCTAATGCCTGGTGGAAATTACTTTCTACTACTTAACTCATGCTGCAAACCTGCAGTATTTTGCTCAAAGCATTGTGTAATAACTGTGCACAACAAGATCTCTGAGTCTTTCCAGCTCCTTCACTTCTCCAAAGTGTTTCTGACTTGAGGTGAGAAGACTAgattataaaacattttattaagctGTCTCAGGAGAACACCACTGAAGCATGAGCAGTTTACTTTCAACCATTTAGCTGTCTTTGATGCCTTTTTTAGGATTTTAATTCACTTTGTGCCTTAACTGTCTTGACAAGCAAATGTTAGTGTGGGGAGAAACACGTATGATATATTGTTCATATACTCATCTGTCCAattctggtgtctgtgtctGGATTTGCCATTTTCATCTCTATCCCACATATATGTAATACTTGGTTATTGACTTAATGAGGAAGAGATTATTGTTTAATTGAGTGAACTTCTGGATAAGGGCTTTAACTGTTAAATGAGTGCCTAATATCATGGGACCCctcatgtttacatttttttaacaaactatcattgtttagttttcatttttaaatcctGAAATAAATGGAAATATTTCATATATCTGTACACTACAAACAGTa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94721 lncRNA upstream 28473 5307111 ~ 5307741 (+) True G70799
TU94716 lncRNA upstream 36887 5297716 ~ 5299327 (+) True G70794
TU94715 lncRNA upstream 48685 5287136 ~ 5287529 (+) True G70793
TU94709 lncRNA upstream 62009 5273976 ~ 5274205 (+) True G70787
TU94704 lncRNA upstream 90074 5241676 ~ 5246140 (+) True G70782
TU94760 lncRNA downstream 2532 5469622 ~ 5470432 (+) True G70829
TU94767 lncRNA downstream 13016 5480106 ~ 5480440 (+) True G70836
TU94768 lncRNA downstream 13419 5480509 ~ 5480793 (+) True G70837
TU94769 lncRNA downstream 13821 5480911 ~ 5481172 (+) True G70838
TU94779 lncRNA downstream 80734 5547824 ~ 5548052 (+) True G70848
XM_039806870.1 mRNA upstream 270541 4946358 ~ 5065673 (+) True LOC120562920
XM_039806871.1 mRNA upstream 270541 4946358 ~ 5065673 (+) False LOC120562920
XM_039806420.1 mRNA upstream 444157 4810388 ~ 4892057 (+) True LOC120562617
XM_039806421.1 mRNA upstream 444157 4810388 ~ 4892057 (+) False LOC120562617
XM_039806971.1 mRNA upstream 764905 4474009 ~ 4571309 (+) False cep192
XM_039805871.1 mRNA downstream 124109 5591199 ~ 5594900 (+) True si:ch211-198c19.1
XM_039805872.1 mRNA downstream 125951 5593041 ~ 5594900 (+) False si:ch211-198c19.1
XM_039805194.1 mRNA downstream 345787 5812877 ~ 5814642 (+) True LOC120561876
XM_039807192.1 mRNA downstream 1169762 6636852 ~ 6805600 (+) True tsnare1
XM_039806809.1 mRNA downstream 1537514 7004604 ~ 7029761 (+) True LOC120562880
TU94562 other upstream 670108 4665784 ~ 4666106 (+) True G70654
unassigned_transcript_306 other upstream 1222933 4113209 ~ 4113281 (+) True trnar-ucg_13
unassigned_transcript_305 other upstream 1223290 4112851 ~ 4112924 (+) True trnai-aau_22
unassigned_transcript_304 other upstream 1223979 4112163 ~ 4112235 (+) True trnar-ucg_12
unassigned_transcript_303 other upstream 1224337 4111804 ~ 4111877 (+) True trnai-aau_21
XR_005639717.1 other downstream 124109 5591199 ~ 5593049 (+) False si:ch211-198c19.1
TU94835 other downstream 493365 5960455 ~ 5960854 (+) True G70894
TU95170 other downstream 2263932 7731022 ~ 7801380 (+) True G71147
TU95377 other downstream 2654511 8121601 ~ 8122239 (+) True G71309
XR_005639665.1 other downstream 2816291 8283381 ~ 8309744 (+) True ano10a

Expression Profile