RNA id: XM_039805872.1


Basic Information

Item Value
RNA id XM_039805872.1
length 860
RNA type mRNA
GC content 0.45
exon number 2
gene id si:ch211-198c19.1
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 5591199 ~ 5594900 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caacagacccttcatcctcctctttggatttgagacaagATCACCTGGACATGGCCCACGGCAAAGAGATGCGGCTCTGGTTTTGTTTTACGTTGGTGTTGTCAGTCGTTCTGACCTCAGGTCTGAAGACCCTCGACTCTGACAAAGAGCTGCAGGACAGCGGGTTCGGTCAACCACCGCCTCGCCATGGCTTCAAGTTGCTGGTGTGGTACATTCAGGACTGCCTGGATAACAACATGGTGGCTCTGTGTGATCCCACTCGAGGAGAGTACGGATTTCATTCGTTTCAGAACCGAGGGCCCAGGCGTCTGCTTCCAGTGATAAAGGACAAAAGGCAATACAGCTACTACACCATTGGAAACCTCCACGCTCCTAATGCCGATGACCTGCCCTATGAAGTCAAGAAGTACTACAACCGCAGTGACCCTGAAAGCAACAAGGACAGAGTTTTGGTGAAATAcaacagaaacaacaaacacatcGAAAACATCTACGCATCTGCACATTATAAGCCCAAAGAGACGTACATAATTGGCCCCAATCTTCTTGCCTCTCTTCGAAAGCCAACAGCCCACATTAGCATAGAAATGTGATGCACTTCTGATAAATCGTTCTGTGGCAAGTTTAATAGCTCTgtgattctttaaaaaaaaaaaaagtgatggaaTTACAAACAAACAATCTTGATTGACATATTTggctgctgcttttctttgaaGTGCCAGACTGCTTTGATGAGCTTTTGTAAGGCTTGAGTATGAGTCAGGAAAGTAAACCTGCACAGCCCTCCTGCTTGTAGAATCTACAGTGAATGCTTTGGAGAAAGATTCTTtgactaataaaaaaaacaaatgttcaaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94779 lncRNA upstream 44989 5547824 ~ 5548052 (+) True G70848
TU94769 lncRNA upstream 111869 5480911 ~ 5481172 (+) True G70838
TU94768 lncRNA upstream 112248 5480509 ~ 5480793 (+) True G70837
TU94767 lncRNA upstream 112601 5480106 ~ 5480440 (+) True G70836
TU94760 lncRNA upstream 122609 5469622 ~ 5470432 (+) True G70829
TU94796 lncRNA downstream 33666 5628566 ~ 5628837 (+) True G70857
TU94800 lncRNA downstream 80572 5675472 ~ 5675685 (+) True G70861
XR_005639721.1 lncRNA downstream 113070 5707970 ~ 5708819 (+) True LOC120562251
TU94802 lncRNA downstream 113311 5708211 ~ 5708693 (+) False LOC120562251
XR_005639723.1 lncRNA downstream 122154 5717054 ~ 5717696 (+) True LOC120562254
XM_039805862.1 mRNA upstream 125951 5336214 ~ 5467090 (+) False LOC120562244
XM_039805863.1 mRNA upstream 125951 5336214 ~ 5467090 (+) False LOC120562244
XM_039805864.1 mRNA upstream 138773 5336214 ~ 5454268 (+) True LOC120562244
XM_039805860.1 mRNA upstream 194493 5336214 ~ 5398548 (+) False LOC120562244
XM_039805861.1 mRNA upstream 194493 5336264 ~ 5398548 (+) False LOC120562244
XM_039805194.1 mRNA downstream 217977 5812877 ~ 5814642 (+) True LOC120561876
XM_039807192.1 mRNA downstream 1041952 6636852 ~ 6805600 (+) True tsnare1
XM_039806809.1 mRNA downstream 1409704 7004604 ~ 7029761 (+) True LOC120562880
XM_039805595.1 mRNA downstream 1444263 7039163 ~ 7292435 (+) True cdk14
XM_039805596.1 mRNA downstream 1444263 7039163 ~ 7238814 (+) False cdk14
XR_005639716.1 other upstream 175120 5336214 ~ 5417921 (+) False LOC120562244
TU94562 other upstream 926935 4665784 ~ 4666106 (+) True G70654
unassigned_transcript_306 other upstream 1479760 4113209 ~ 4113281 (+) True trnar-ucg_13
unassigned_transcript_305 other upstream 1480117 4112851 ~ 4112924 (+) True trnai-aau_22
unassigned_transcript_304 other upstream 1480806 4112163 ~ 4112235 (+) True trnar-ucg_12
TU94835 other downstream 365555 5960455 ~ 5960854 (+) True G70894
TU95170 other downstream 2136122 7731022 ~ 7801380 (+) True G71147
TU95377 other downstream 2526701 8121601 ~ 8122239 (+) True G71309
XR_005639665.1 other downstream 2688481 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other downstream 2688481 8283381 ~ 8309744 (+) False ano10a

Expression Profile