RNA id: XM_039805877.1


Basic Information

Item Value
RNA id XM_039805877.1
length 2620
RNA type mRNA
GC content 0.56
exon number 15
gene id oxr1a
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 1376272 ~ 1650639 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTGcaaaaataacatgaatgtgGTTTTATTGTCCCCCTACAGACTGAAGCAGAAGTCACAGTCGGTGGATATTGCCAGTCAAGGTTTCTCCCCGACTCTGGTGCCAGCCTCACCCCTCAACAAGGCTGCACCACCTGTTGCCACGACAACGACCACCCTCGCCGTGCAGGAGTACAACACTACCAACTCCCAGCGCCGCAGCCCCCGGTGCGGGGAGCTGAAGCGAGGCTACACCATAGATACCGGCCAGAAGAAGACTCCAGAGAAGAAGGATGGGAGGCGCATGTCGTTCCAGAGACCCAAAGGGACCGTTAAATATTCTGTGGAATCGCGGGACACGTTGAACAGCATTGCGCTCAAGTTTGACACCACACCCAACGAACTGGTTCAGCTGAACAAGCTGTTCTCCAGAGCAGTGGTGCCTGGCCAGGTTCTGTATGTTCCTGATCCCGAGTACGTCTCCAGTGTCGGAAGCTCCCCTTCCCTCAGTCCCATCAGCCCCCTGTCTCCCACCTCCTCAGAAGCTGATTTAGAGAAGGCAACGGACTCTGATGGCCCCCCCAGACCAGAAGGCATTCACCCTCCAGTCTTCTCCGCCCTGCGGCAGTCCAGAGTGGTGTCATCCACCTCCGAGGAGGAAGAGGCCCTCACAGAGAAGTTCCTCAAGATCAACTGCAAGTACATCACTGGTGACATGGGTGCGGTGAGCGGGGTGTTGCTGGTGACACCCAACAACATCATGTTTGACCCTCACCGGATGGACCCACTGGTTCAGGCCCATGGGTGCGAGGAGTACGGCATCATGTGTCCTCTGGAGGAAGTACAGTCTGCTGCCATCTGCAAGGAGATCACCGACCCCAAGATCAGAGAGGCTGTGCCCGATGACCTGGAGCCTCTTCCTACTGAGAGACATCCTTCCCAGAAGGACCCAGAGCAGCGCCTCCGGGAGCCAGGGGCCAACGACAGTGGCAGCACGGCCCCGCGCAGCACTGAGGGCTCCCTCTCCGAAGACGTCTTCACTGAGCCGGAGCTGTCCCCCATCCGTGAGGAGGACCAAGCGTCTAGCGAGGACCTCCGCCTGGACAAGTCCTCTGCCGCTTCCACAGAGTCTGTGCAAACTGTCACCCAGGTGGAGGCCACCAGTGCCGGGTCCCAGGCCCCAGGCAGCGCCCACGGCTCCGTCAGTCAGCCGGAGGAGCGCAGCGCTGCGGGCAAAGGAGAGGACAATCCGCCAGACACTGCCACAGAAAGAGATAGCCAGTCTCCCATGGGATCCAAGCAGCAGAGTGTAGAGAAGCCAACAAATACACCCActaccaccagcagcagcactaGCCAGGCCGAgggccccagcagcagcacctcTCGCCCAGGGTCCCAAAGCTCAGCCACCCCTGGCGCCACAGACACCAACTTCGTCTCAGCCAGTCAACAGGGGGAAGCCAACGAGGGGACAGACGTCTCCAAAACGGACACTATGCAACAAGGcaaggaggaaaaggagaatGTAGAGCAGACGCCAAAGGACAGCACGCAGAACTCAGCAGAGGGTACAGGGTCTGCGGAGAGGCGGAAGCACCCAACTCACAAGTTCCTGTGTCTGCGGGTGGGGAAGCCCATGAAGAAGACGTTTATTTCTAACGCCAGCGCCTCCATGCAGCAGTATGCCCAGCAGGGCAAGAAGCACGAGTACTGGTTTGCTGTGCCGCAGGAGAGgtctGAGCACCTGTACGTGTTCTTCATGCAGTGGAGCCCGGACATGTACGGTGAGGGGGTCAGGGGGATGGGACAAGAGCCTGGGTTTATGGTTGTCAAGAAGAATGAGGTGTCAGAAACGACTGAGGACGAGCCCATCACTGACCTCAATGTCAAGGAATGGGAGGTAGTGTCTCTGACGGAGTACCACCGTAGGATTGATGCGCTAAACAGCGAAGATCTGCGCTCGCTCTGCAAACGACTCCAGATCACCACCAAGGAAGAGGTGAACTCCAAGCATGGCACATCCATCAAGACGGAGCTTGAGCCAGAAACGTTCAAACCCAACCTCAGAGAATCCAGTGATCTCCTGGAGGCCGACCAGATAGAGAAGCTTGCCAAGAACCTCCCACCGCGGACCATTGGGTACCCATGGACGCTGGCTTTTGGCACATCAAAGCATGGCATGAGCATTAAGTCGCTGTACAGAGCCATGCAGGGCCAGGACACCCCAGTGCTTATGGTTATAAAGGACAGCGATGGCCAGGTGTTTGGGGCGTTGGCATCGGAGCCCTTTAAAGTCAGCGATGGCTTTTATGGCACAGGAGAGACCTTCCTCTTCACCTTCAATCCAGAGTTTCAGGTGTACAAATGGACAGGTGACAACATGTTCTTCATCAAAGGAGATATGGACTCCTTAGCTTTTGGTGGAGGAAGCGGGGAGTTTGGCCTGTGGCTGGACGGGGACCTCTACCACGGCAGGAGTCACTCCTGTAAAACATTTGGGAACCCCATGCTCTCAAAAAAGGAGGATTTCTATGTTCAGGACATAGAGATCTGGGCTTTTGAATAACACAACAGTCCAccacagggaaaaaaaaaaacaagtcctTGCAAAGGGCAAACTGAGGGGTCCTCCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93593 lncRNA downstream 21247 1354298 ~ 1355025 (-) True G69866
TU93518 lncRNA downstream 90393 1285584 ~ 1285879 (-) True G69817
TU93497 lncRNA downstream 202857 1173162 ~ 1173415 (-) True G69799
TU93487 lncRNA downstream 220769 1085502 ~ 1155503 (-) True G69794
TU93425 lncRNA downstream 293121 1082638 ~ 1083151 (-) True G69746
TU93620 lncRNA upstream 164706 1676118 ~ 1676351 (-) True G69893
TU93653 lncRNA upstream 213772 1725184 ~ 1725882 (-) False zfpm2a
TU93665 lncRNA upstream 435533 1946945 ~ 1947157 (-) True G69927
TU93670 lncRNA upstream 444779 1956191 ~ 1964307 (-) True G69932
TU93739 lncRNA upstream 617059 2128471 ~ 2128741 (-) True G69995
XM_039804804.1 mRNA downstream 61136 1308856 ~ 1315136 (-) True si:dkey-29h14.10
XM_039805026.1 mRNA downstream 203727 1160199 ~ 1172545 (-) True LOC120561787
XM_039805046.1 mRNA downstream 231358 1089272 ~ 1144914 (-) False ubr5
XM_039805936.1 mRNA upstream 213746 1725158 ~ 1861166 (-) True zfpm2a
XM_039805937.1 mRNA upstream 213746 1725158 ~ 1750406 (-) False zfpm2a
XM_039805130.1 mRNA upstream 465859 1977271 ~ 1979210 (-) True LOC120561841
XM_039807126.1 mRNA upstream 470992 1982404 ~ 2171236 (-) False rims2a
XM_039807129.1 mRNA upstream 470992 1982404 ~ 2171236 (-) False rims2a
TU93283 other downstream 643524 729924 ~ 732748 (-) False osr2
unassigned_transcript_293 other downstream 1347589 28610 ~ 28683 (-) True trnai-aau_14
unassigned_transcript_292 other downstream 1347946 28254 ~ 28326 (-) True trnar-ucg_8
unassigned_transcript_291 other downstream 1348955 27245 ~ 27317 (-) True trnar-ucg_7
unassigned_transcript_290 other downstream 1349642 26557 ~ 26630 (-) True trnai-aau_13
TU94269 other upstream 2117721 3629133 ~ 3629818 (-) True G70407
XR_005639920.1 other upstream 2467899 3979311 ~ 3979414 (-) True LOC120563202
TU94368 other upstream 2560912 4072324 ~ 4077779 (-) False eny2
TU94369 other upstream 2560912 4072324 ~ 4077779 (-) False eny2
TU94370 other upstream 2560912 4072324 ~ 4077779 (-) True eny2

Expression Profile