RNA id: XM_039805905.1


Basic Information

Item Value
RNA id XM_039805905.1
length 5649
RNA type mRNA
GC content 0.56
exon number 23
gene id LOC120562270
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 32315022 ~ 32374187 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCAAAGTGGCTGAAGAGTGAACACAAACTCACCAGCCTGAAACAACAGTTTACCAGCACTCAGCCTGTGTGGCTGGTGTTCATGTTCTGCCCTGGTTGTGAAGTTTGGGTTTTAAAGCCTCCGTCAAACTTATTATTCTTTTGTGATGCGAATGTCCCGGTGTGCTACAACATGCAGGATAGGCTGCCTACAGACTGTCAGCACAGGAGGAGGGCAGCAGCGCGGGCTGGCCATAGGCCCTGAGCCCTGCTCGTTGAGTTTCTGATCGGCTCAATGCCGGATTAGTTCACTGACGGAGATGCTGCTGAGCCTGGGCCAGATCAGGTCTTGCTGCTCCACTCGTGTAACCCCACAGCACGCAGTGAACTTGACAAACAGCAGAGAGATGGAGGCATTCGATGAAAGTATTCCCTCGCGAGAAAGTAAGCAGGACCAAAACCTGGCCGAGAGTTGCCTTTCCTACAAAAACGGAGAGCAAAAAGGCTTCACTTCAAAGCCTGTTTTTAACTTTGCAGGACCCATTGTGCAAGCTTGCCAGGACGTTGCTGTTTTTACTGTATAGGTTATTTATAACGGCAGAACAAGAGACTCCTGAGGCAAATTCCTCCCAGGATATGTTTCCGTTGCTCCCGGGGGGACGAGCCGAACAGTCACACACTCTGCCTGAATCAAGAAGGGAGCACTACATTAACCACAAGGCACCGCTTGCGCTTAAAAAACCCAGCGCTGCTGCTTTCAAGGGACGTAAACGGCTCCGAGCCAGAGAGATAGCCTGGTCTATCCTTAGCAGGTCCCTGGATGCCCCGCGGCGCACCGTCCTCGGCCGCGCAGTGCTTCCCAATGGCCGGCAGTTGACCCCGCCCACCAGGATGACGCTGCGCGAGCAGCTGAGAGAGAAGATCTCGGCGGCCTTCTACCGCCATGGGCTGCTGTGTGCCTCCTACCCAGTACCCATCATCCTCTTCACCTCAGCCAGCATCCTCACCTGCTGcTATCCCTTATTGAGGCTTCCCCTGCCTGGGACGGGTCCCGTGGAGTTCACCACAGGAGTGCGAGATTACAGCGTCCCTTCCCATGAGCCTCAGGGAGACCTCGGAGAACGGCCCGACTGGtACCGTGGTCCTCCGGTTGCCTACATCCAGCAGGTGTTGGTGAAGGCGGCGGTGTCTCCGTGGGACAGCAGCCTGGTGACGGTGGACGTGTTCCGGTCGCCGCTGGGCCGAGCCTTCAGCCTGCTGGAGGAGATACGCAACCACGTCCACTCTGACAGCTCTGGGGTTCGCAGTCTGGAGACGCTGTGTCTCCAGGTGACAGACCTGTTTCCGGGCTTACGGCGGATGCAGTCGGTGCTGCCGGAGCACGGCTGCCTGCTCGTTTCTCCCGGCAACTACTGGCAGAACCAGCGGGAGCTGTTCGACTCGGACCCCGACCTCCTCAAGACCATCCAGAAACATGAACCCAAAGGCCTGCACACCTCTGCCACGCTGCGAGacTTGCTGTTTGGCGTCCCTGGGAAGTACACTGGGGTCAGCCACTACAACAGGAAGAAGGTGGTGACCTACACGATGACTTTAGTGCTGTCCCGCTACGATGCAAGGTTCCTGGGCAGCCTGCGGGCGCGTCTGAAGCAGCTCCACCCGTCGGCCAACTGCAGCCTGAGAGACGACCACATGGTTCACGTCCACTTCAAAGAGGAGATCGGCATCGCCGAGCTCATCCCCCTCGTCACCACATACATCATCCTTTTTGCCTACATCTACTTCTCCACACGAAAGATTGACATGGTGAAGTCTAAGTGGGGTCTGGCTCTGGCTGCTGTGGTCACAGTCCTCAGCTCTCTGCTCATGTCTGTGGGACTGTGTACGCTGTTTGGACTGACACCCACGCTCAACGGAGGGGAGATCTTTCCTTATCTGGTGGTGGTGATCGGCCTGGAGAACGTCTTAGTCCTCACCAAGTCCGTGGTGTCCACCCCCGTCGACCTCGAGGTCAAACTTCGCATCGCTCAGGgcCTTAGTAATGAGAGCTGGTCTATCATGAAGAACATGGCCACTGAACTGTGCATCATCCTCATTGGGTATTTCACTCTGGTGCCAGCTATCCAGGAGTTCTGTCTGTTTGCTGTGGTGGGGCTGGTGTCTGACTTCTTCCTGCAGATGTTCTTCTTCACCACAGTACTATCTATAGACATCCGACGCATGGAGCTGGCTGATTTGAACCGCCGCCTGCCAGCCGAAGCAGGACTCCCGCCCCCCAAGCCTGGCCCGCTGCGAACACGCGAGGCCCCCCCTCCGCCGCGGCCCTCCCCCCACACAATCACCCTGCAGACGCCGGCCTTCAGGAATCTAAGGCTTCCCAAGAGGTTGCGTGTGGTGTACTTCCTGGCCCGCACACGCCTGGCTCAGCGCATCATCATGGTTGGCACGGTGATCTGGATCGGCATCCTCGTCTACACCGACCCAGCTGGCATACGCACCTACCTGGCTGCACAGGTGTCTGAGCAAAGCCCTCTGGGAGATCCCGGAGGAGGCGGTCTGCCCCCTCACCTCGGGGTGGCCCCCGTCTTTCGTGGAGGCGATCCTACCAGTACCCTCGGCATCAACCCCGCACCGGCTCCTACTCCCATACCTGAGAACCAGTCACAGGGCCACCATGGCTCCTCCAGGGTAGGGCCCCTCCCAGAGGCCCCGCCTCCCGCTGTGCCCCAGATCACCTGGGGAGCGGAGGACGAggagggctggaggaggctctCCTTCAGGCACTGGCCATCGCTTTTCAGCTACTACAACATCACTTTAGCTAAGAGGTACATCAGCATCCTGCCCGTCATTCCCGTCACCGTTCACCTGAGCCCCCAAGAGGCCATTGAGACGCGTCACCCTCAGGACACAAAACACCCCCCACCATCTATTCCCAAGGTTGCTGTAGATATACAGACAGACCTCACGCTCTACAAGGTGGCAGCTCTGGGCCTGGCGGCGGGCGTCCTGCtggttcttcttctcttctgtctctACCGGGTTCTCTGCCCGCGAAATTACGGCCAGAACGGCGTCACTCATGGGCGCAGGCGCCGAGGGGACCTGCCCTGCGACGATTACGGCTACTCGCCACCCGTCAGCGAGATCTCACCACTGCTGCTGAGGGGCCACAGTATGGACATTGAGTGTTTGGCCAGTGACGGGATGCTGCTGGCTAGCTGTTGCCTGGCAGGACAGATTCGGGTCTGGGACGCCCAGACTGGTGACTGTTTGACCGTCATCCCAAACCACAGGCTCAGAcggagcagcagcagtggctgcTGGGAGCAGCGGGACGGCTGGGACAGCGTGAGCGGAGCCGCCGAGACCGAGTGTTTAGGCTCCGAAGCTCACGGCTCCTCCATCAGCGGTGACGGCCTATCGGAGGGAGAGGGCTACCCGCTGAGACGCCGCACTGCTCCCAGCCGGCCGACGCTATTCACCGACCAGCCCGATCTTACCCCGCTCATTGATACCAACTTCGCCGACCAGCCCACCTCCCACCTCTGCACCCCGCCCAGGGAGGGCTTTGACTTTGGAGGTCTGGTGGAGCGCGCCTACATGGAGCACGAGCCCCCGTCGCCCTCCGCCTACCCGTCTCCTTCCTCAGCCTCCTCCTCGCCGCCGTCAGGAGCTCAGCTCCAGAGAAGACCCAGCTTAGGGGATTCAGCCGCCTTCTTAACCCAAGATAGAGCCTCCGCAGCGGGGACGCAGGCGACGGCAGACTGGGAAAGCTCTGTCTGGGCCATGGAGCTGAGAGGAAATCTAATAGCTGCTGGGAGGAGCAGCGGTAAACTGGAGTTGTGGGATGCAGTGGAAGGGTCGTTACGCTGCATTAACGAAGACGGAGTCTCTGGGATCACAGCCCTAGCCTTCCTCAACAACagAATCGTAGCGGCTCGGCTGAACGGGTCTCTGGATTTCTTCACTGTTGAGATAAACAAACCTCTGGGTCTGCTGCAGTACAGAGGCACCCCTGGGCGAGGCAGCATGCCTCCCTCTCCCTGTTACAGCAGCGAGGATGTGATCAGCTGCCAGCTCACACGCTCGGTACAGTGCGCTCACCAGAAGCCGATCACGGTGCTGCGAGCGGCCGCCGGGAGGGTCGTCGCCGGTAGCCAGGACCACACTGTCCGGGTTTATCGTCTAGAGGACTCGTGTTGCCTCTTCACCCTGCAGGGTCACTCTGGAGGGATCACAGCCATCTACATAGACCAGACTATGGTTCTGGCGAGCGGTGGGCAGGACGGCGCCATCTGCCTGTGGGACGTCCTGACAGGGAGTCGTGTCAGCCATGTTTACGGTCACCGTGGGGACGTCACCTCGCTGGTCTGCACCACCTCTTGTGTCATTAGCTCGGGACTGGATGACCTCATCTGTGTCTGGGACCGCAGCACCGGGATCAAACTCTACTCGATACAGCAGGAGGTGGGTTGTGGGGCCAGTCTGGGAGTGATCTCCGAGTCTCTCCTGGTGACGGGGGGCCAGGGCTGCGTCTCGTTTTGGGACCTGAACTTCGGTGACCTGCTGCAGACGGTCTACCTGGGCCAGAGCAGCGACGGACAGGGCGTCCGGCAGCTGCTGGTGCTCGACAACGCCGCCATCATCTGCGACTTCGGCAGCGAGCTCAGCCTGGTGTACGTGCCCTCCGTGCTCGAGAAACTAGACTGAGGAGAGACAGACGGAGGGCAGCCGTTGATGGTGGTGGGAAGAAAAACATGCACTCGCAACATCGTTTCCACCTccatcacttcttttttttgtttctgacaCCCAAAGGAGACCCGATCATTAGACCGGTTTCCATCTGCGCACaagactcttttttttattttttttatttagatgttTTAAGTACAAGCCTGGATGTAattatggagagagaaaaaagctgAGGAGTGATTGTGcaacctgctgcattttatcgGAGGAGAGTGACAGACCCTTGATACTGAACTGTTGACATTTACAAGGGTCATGAGGTTTGTTTAAGAAAAGCTGGATGTTTCTCATTTAAAGAGGATCCACCAGtcaatgctttttttatttttttaaaatttgttttgtggcTCTGCCCTCTATGCTGCTTGTACGGGTGGGGCTTCACTGTgacccccacccacccagagAGGAAGATAAAACGGTCAccttatattttaatattcctGCTGCCTCTTTCGCTCAACAGTAAAGTGCAGCCACAGCAAGCTCTATGGGTCTATGGCCTGAGCTGCACAGTTACACgtacatacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgtgtgtgtgtgtgtgtgagtgaatgaatCTAGGCCCTTTTTATGGCAAAAATactgctgagaaaaaaaaatgtttggaaatgtgtgtgtgtgtgagggataACTGATGATTACTGTGTAAAGTAAACCTCCATAGGGggctgtttttttatgtataaatCTATTATTTATTagcgatacatttttttttttaaataacagttTGTTTATGAATGGCTAATCCCGGCTCTTTAACATAAATATAACAATGTGGaaataatgacaaaaatgtaaatggtgattgttttttttggcaggATTGGGGCTGTGGTTATAAAACGATTTGTGATATTGAACTTGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103984 lncRNA upstream 22887 32295095 ~ 32295320 (+) True G77757
TU103929 lncRNA upstream 178064 32138777 ~ 32140143 (+) True G77722
TU103887 lncRNA upstream 327837 31989886 ~ 31990370 (+) True G77687
TU103884 lncRNA upstream 332467 31985466 ~ 31985740 (+) True G77685
TU103883 lncRNA upstream 335491 31982468 ~ 31982716 (+) True G77684
TU103989 lncRNA downstream 510 32374697 ~ 32376913 (+) True G77762
TU104008 lncRNA downstream 79000 32453187 ~ 32453410 (+) True G77776
TU104096 lncRNA downstream 392084 32766271 ~ 32766508 (+) True G77862
TU104101 lncRNA downstream 447056 32821243 ~ 32821488 (+) True G77867
TU104133 lncRNA downstream 554147 32928334 ~ 32979901 (+) True G77883
XM_039805907.1 mRNA upstream 3294 32309084 ~ 32314913 (+) True elp6
XM_039806039.1 mRNA upstream 24505 32229004 ~ 32293702 (+) False cspg5a
XM_039804931.1 mRNA downstream 30946 32405133 ~ 32421472 (+) False LOC120561717
XM_039804930.1 mRNA downstream 30946 32405133 ~ 32420184 (+) False LOC120561717
XM_039805766.1 mRNA downstream 479170 32853357 ~ 32888350 (+) False LOC120562193
XM_039805768.1 mRNA downstream 494908 32869095 ~ 32888350 (+) True LOC120562193
XM_039805769.1 mRNA downstream 494917 32869104 ~ 32888350 (+) False LOC120562193
TU103881 other upstream 338298 31976318 ~ 31979909 (+) True G77682
TU103600 other upstream 1182061 31134829 ~ 31136146 (+) True G77447
TU103301 other upstream 2193569 30123702 ~ 30124638 (+) True G77239
TU103032 other upstream 2905794 29404008 ~ 29412413 (+) False G77028
TU103024 other upstream 2928315 29384135 ~ 29389892 (+) True LOC120562177
XR_005639638.1 other downstream 30946 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other downstream 30946 32405133 ~ 32421472 (+) False LOC120561717
TU104140 other downstream 726226 33100413 ~ 33101534 (+) True G77888
unassigned_transcript_355 other downstream 1251744 33625931 ~ 33626002 (+) True trnap-agg_3
unassigned_transcript_356 other downstream 1256852 33631039 ~ 33631110 (+) True trnap-agg_4

Expression Profile