RNA id: XM_039805912.1


Basic Information

Item Value
RNA id XM_039805912.1
length 2110
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC120562274
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35621760 ~ 35630081 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTACTATAACAACCCTGGTCTCCGACACTTTACTGCTGCTACTTCATCATGTTGAAGCCCGTTGCATTGCTCCTTCTGCTGGCAGGTGTGGTCCACACTGTGCCCCACCCTGTGTGCACTGTGACTGCCTCCACCGTCATTGATTTCTTCAACAGAATCCGGTCGGTCCCGGATCGCTGTACATACACACTGATTGGAGATGACACTGTTGTACTAGCAGCGAGATTCCAGGAGCGAAGCCGTACAGATGTGCCGTTTTTGGACTCCTTGCAAATAATTTTAATAGTTTCAACATCTGCCTTGGACGTCTATCGATACCTAGAAATCTATCTTGGACAAGGGGGACTAGTTCAGGTTGAGGGCCGAACACTAATGCTCAACGCCACGGCTCAACTGATCAACGGTGTGGCGTTCTCCAAGGACCAGACTGGAGTCACTGTTACTGGTCCTTCGCTCACAATCTCTTTTGATGGCAACACTGCAGTAATCACAGGAGTTGCTACAGCTTCAGAAGGCTTGTGTGGTAACCCCATCAACGCCAGTCAGACCTTCAATCTGGCTGCTGAGAAGACTTTCGCCAGTGTGTTTGGCTGCGAGGTCCTGTACAGCAACACCCCCAACAATACCACCACCTGCAACCTTACAACTGAACGCTGTAATCTCCTGATGCAGGCACCCTTCACCGATTGCCACAGCCAAGTTGACCCAGCTCCCTACATAACCGCCTGTGCAGAAACTTCGTGCAAATTCCCGACCGAGGAAGGCCTCGCTCTCAGCTGCCAGTTTTTTGACGCTTACGCCAAGACCTGCGGTGTGGAAACCAACATCACACTGGGCGACTGGAGGTCACCAACCGTTTGCCctgTCCCTCAGGTCTCCTGTATGGAGCTGTACTGCAGTGATAACGAGTACTGTGACAAGAACGGTGAACCCCAATGCCTCTGTCGGGCTCTTTTTGCCACCAAGTACACACCAACAAACTCTTTAGGCGACCCGACAGTCTGCAATGGGAGCTCTGCCACTCTTACTCTGGCTGGATGTCTGCTCAGCGCCAAAAACATCGACTACACCACCTTACACCTCCTAGACGAGAGCTGCAAAGGGCACATGGACAGCGAGACCCACATGGTGACTTTCAGCTTTGACAGCAGCAACACCTGCGGGACCGAGATCATGAGCAACAAAAGAAGCCAAATAATCTACCAGAACACCATTACGACGCAGAACGGGTCCATGGACATAATCACCCACCAAGACAAAGTCATGATCGACTTCTCCTGCTTGTACACACTGCCAGACCTCACGAGTGTGTCCTTCAAAATCAAAGAgagctcTGTGGTGCAGGAGATTGTATCTGGAATTTGGAATTACACTCTGATGATGAATTCATACACCGACGGCGAATTCCGGACCTCAGTCGGGCCAGACACTGAGCTGGTGCTGGGCCAGGAGGTCTGGGTGACGCTGATGACTGTGGGGCTGAATGACACTATGGTCTCCATAATGACCAACTCCTGCTGGGCGACCAACCAGCCATCACCAAATGAGAGTCTGCGACACGACCTTGTCATCAACGGATGCCCGAACCCTGCTGACCAGACGGTGAGCATGCAGGGAAATGGACTGGGAACATTCAACGTCTTCTCTTTCAACATGTTCCAGTTCTCTGGGAAAGCTGGCGACATCTACCTGCACTGCCAACTGGAGCTGTGCCCCAGCACCTGCCCTCCGAGCTGCAGCGGAGGTGGCAGGAGGCGCAGATCTCGAAGGTCTAAAAGAGCAGATGAAAACCCAGCCCTCATCACTATGGCCTGGAATAATTAAAGACTGCTCCCCTTTTTGATCGATTACATGATGGTTCCTGACTTAAGCTTCGTCCCCATAAAGAGCCTGAGATGTCACTGAGCATCTGAAAGTGGATCATTGATCTTAGCGCTGTGCTTGTGCTATGTTTATGTGGGGACACTCAGACCCCATATAGACTGGGGAATGTTCCTTTGTTTCATAACTACATTTTCCATTGGCTCAAAGTGACTCATGTTAACTGACTCCTGACTTATGGTATGACTGttataaaatgatgaaaaaaataaagtttcagtCCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105163 lncRNA upstream 44110 35575172 ~ 35577811 (+) True G78645
TU105092 lncRNA upstream 90197 35528475 ~ 35531724 (+) True G78603
TU105094 lncRNA upstream 90197 35528475 ~ 35531724 (+) False G78603
TU105101 lncRNA upstream 123183 35498360 ~ 35498738 (+) True G78607
TU105074 lncRNA upstream 228322 35393133 ~ 35393599 (+) True G78592
TU105172 lncRNA downstream 12825 35642906 ~ 35643353 (+) True G78653
TU105177 lncRNA downstream 18449 35648530 ~ 35691645 (+) False G78655
TU105175 lncRNA downstream 31319 35661400 ~ 35691645 (+) True G78655
TU105181 lncRNA downstream 31319 35661400 ~ 35691645 (+) False G78655
TU105178 lncRNA downstream 31617 35661698 ~ 35691645 (+) False G78655
XM_039804890.1 mRNA upstream 75173 35535047 ~ 35546748 (+) True ccne2
XM_039804891.1 mRNA upstream 75173 35535244 ~ 35546748 (+) False ccne2
XM_039804892.1 mRNA upstream 75173 35535294 ~ 35546748 (+) False ccne2
XM_039804889.1 mRNA upstream 93912 35508333 ~ 35528009 (+) True tp53inp1
XM_039804888.1 mRNA upstream 132444 35448568 ~ 35489477 (+) False nagpa
XM_039805916.1 mRNA downstream 119413 35749494 ~ 35773988 (+) False LOC120562275
XM_039805914.1 mRNA downstream 119413 35749494 ~ 35773279 (+) False LOC120562275
XM_039805915.1 mRNA downstream 119413 35749494 ~ 35769100 (+) False LOC120562275
XM_039805917.1 mRNA downstream 119413 35749494 ~ 35759175 (+) False LOC120562275
XM_039805920.1 mRNA downstream 131732 35761813 ~ 35773279 (+) False LOC120562275
TU105077 other upstream 213239 35405375 ~ 35408682 (+) True G78594
unassigned_transcript_361 other upstream 433722 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 765389 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 1077542 34529355 ~ 34544379 (+) False G78200
TU104420 other upstream 1585954 33990595 ~ 34035967 (+) False sh3bp5b
TU105193 other downstream 235761 35865842 ~ 35888172 (+) False LOC120562279
TU105334 other downstream 507678 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 663906 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 762171 36392252 ~ 36434225 (+) False LOC120563181
TU105394 other downstream 762171 36392252 ~ 36465230 (+) False LOC120563181

Expression Profile