RNA id: XM_039805922.1


Basic Information

Item Value
RNA id XM_039805922.1
length 1536
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC120562277
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35849473 ~ 35856736 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTCACAATCTTGAAGCAGAAGTCCAGTAAAGACCATCACAGCGGAGCAGACGCCCTCCTAACAGCTCTCATACAGGACTGCAGCAGGACTTTAAACATGTTCAGGATGGACAGAAATCTACAGGAGGAAATTGAGGAACTcaaggaagaagaagatgacTATGTTAATGTACAACCCTGGACTATGGATAAAGTGGCAGCTCGTCGAAACCAGAGGTTTTGCTGCTTCTCTCAGTCTTTTCCACTGATAGCAGTGTGTTGGCTGATACTGTTGGTCATCATGGGCCTCTGTATCTACTTTGCTACATTAAGTCATGAGAGGGAAAGTGAGCTGATGGCTGCCAATCGCAACCTGACAAACCTCAACGACAAACTCAACGTCTTAGAAAACCAGATCACAAACCTGACTGCAGTAAACCAGGAGCTGGAGATGGAGAGGAACAACGTAATAAGACCGATACAAATCATGGAGGCAAACTGGAACAAACTCAACGCCAGTCGAGTTAAGTGGACTATTGATGTCTACTGCCACAACGGGAGACAGTGTAAAGCTTGTGAGCAGGGCTGGGAACTCTTCCAGTCCAGCTGCTATCTGATTAATCCTTCTTATGGGAGAACCTGGGAAGAAGCTCGAGAAGTCTGCAGAAGACAGAGTTCAGATTTGGTTGTTGTACATGATGAAGATGAACAGAATGTACTCAATTATTCCAGAAGGTACATATACGGGTACTGGATTGGCCTGAGAGCTGAAGGAGGGAGATGGAAGTGGATCGATGGAAGTGATCTGACTCAAAGTGACTGGATACAAGACCATCCACCACCTGCTGACGGTCAGTGTGCAGTTTCTGTCAGGTCCAGATGGAGATCAGTGAGCTGTGCTGATAGAAACGCATGGATCTGCAAAAAGAAGGCTTTATCTTTTTAAACATTACAGTCAGACTTGAGAAATTTACTGGATACTCTGCATGATAATATCAACTTGCTTCAGAAATATCAAACCGTGAAGACCTCTACTTCACAATTTAAACGTTTTGTTTTCATGAATAAAAATGCTAATTATTTATCTTTTGAAAAAGAGAATATAAATCTTCACAGTGAATTATTTTTCAAAgcttttgtgtgtctctgaatATAGACGCTCAGATGTGTTGTATAGATGAATTAGATATTGGATAATATTGGTATGGCTACTGACAATCTGAGAAAAATACAATGGCTGGCCTGAAGGCTAAAGACTAAAGACTAAACTGTTAACTATTAATAACTCTGAATGTGCTTTTGTTCTCCTTTGTTAGAGATGTGATGTTTATAATTTGTATATCAGCAGATTGatgagagggacagacagactgctcagcttcctgtttcctgtgtgaCAGGTTATATTGTTGCTACTCATGAGCCAAAATTGAGGCACAGCatcacttgtttttcttcagcaTTTAATGTAAATCATATTAATATGTAGAGTGTTTTATCTATCTGGAAGCAAAGTCCTGTTTCATTACATTGAATTAAACGCTGTTATGCATTGTT

Function

GO: NA

KEGG:

id description
ko04145 Phagosome
ko04670 Leukocyte transendothelial migration
ko04380 Osteoclast differentiation
ko05140 Leishmaniasis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105215 lncRNA upstream 27832 35821290 ~ 35821641 (+) True G78674
TU105210 lncRNA upstream 35866 35775272 ~ 35813607 (+) True G78669
TU105209 lncRNA upstream 35866 35783426 ~ 35813607 (+) False G78669
TU105208 lncRNA upstream 65810 35783426 ~ 35783663 (+) False G78669
TU105202 lncRNA upstream 96171 35743295 ~ 35753302 (+) False LOC120562275
TU105270 lncRNA downstream 51290 35908026 ~ 35908235 (+) True G78705
TU105271 lncRNA downstream 52084 35908820 ~ 35909069 (+) True G78706
TU105272 lncRNA downstream 71704 35928440 ~ 35928896 (+) True G78707
TU105281 lncRNA downstream 106037 35962773 ~ 35963505 (+) True G78716
TU105307 lncRNA downstream 177612 36034348 ~ 36034652 (+) True G78736
XM_039805916.1 mRNA upstream 75485 35749494 ~ 35773988 (+) False LOC120562275
XM_039805914.1 mRNA upstream 76194 35749494 ~ 35773279 (+) False LOC120562275
XM_039805920.1 mRNA upstream 76194 35761813 ~ 35773279 (+) False LOC120562275
XM_039805919.1 mRNA upstream 76194 35764890 ~ 35773279 (+) True LOC120562275
XM_039805918.1 mRNA upstream 76194 35769239 ~ 35773279 (+) False LOC120562275
XM_039805923.1 mRNA downstream 9113 35865849 ~ 35872244 (+) True LOC120562279
XM_039805924.1 mRNA downstream 9113 35865849 ~ 35872244 (+) False LOC120562279
XM_039806167.1 mRNA downstream 18391 35875127 ~ 35883935 (+) True LOC120562454
XM_039805921.1 mRNA downstream 39614 35896350 ~ 35900892 (+) True LOC120562276
XM_039807298.1 mRNA downstream 167890 36024626 ~ 36026571 (+) True LOC120563160
TU105077 other upstream 440791 35405375 ~ 35408682 (+) True G78594
unassigned_transcript_361 other upstream 661274 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 992941 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 1305094 34529355 ~ 34544379 (+) False G78200
TU104420 other upstream 1813506 33990595 ~ 34035967 (+) False sh3bp5b
TU105193 other downstream 9106 35865842 ~ 35888172 (+) False LOC120562279
TU105334 other downstream 281023 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 437251 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 535516 36392252 ~ 36434225 (+) False LOC120563181
TU105394 other downstream 535516 36392252 ~ 36465230 (+) False LOC120563181

Expression Profile