RNA id: XM_039805943.1


Basic Information

Item Value
RNA id XM_039805943.1
length 3374
RNA type mRNA
GC content 0.46
exon number 10
gene id si:ch73-22o12.1
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 24387915 ~ 24466018 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAGTCACACACAGTCGGACAGCCGCGCGCTCAGAGGAACTAGTTGTTGGAGTAGAGAGAGCGCGGCAGCACTTCATTACATCCAGAGCACCAGCTGGGGGGGAATATTCACCTGTGCGCTGCCAGGACGAATTCACAAGGAttttcaatatatttttttagcagACTCCGTCTTAAAGGCGCAGCGAGGGACATTTGAAACAAGAATCTCTGTCGGACTCCTGGTCTGTCCTGTAgccaaacaagtttattttttttgccttgaGTGAGtaatcttttacacagaaacTGACCCGCATCTGAAGGTTTCGATTTTACATTTATTCCGGAGAGACTGCGTGCCTAGTTTCATAGAGGGGACAGTAATCGACCATGGCGAGACATGATGCCCAAATCTGGCATGCCTGCTCAAAAATGATCGGACTGCTCTGCTTGGTCGCGTCGATACTTCGTCAACACGGAGTGTCAGGTCAGCGGGTGAAGGTGGAGCCAGAGGTGTTGTCGTATCCCGGCCAGACAGTTAACCTGCGCTGTGCCTTCACTGATGCCACTGGGATACAGCTCACAATGGTCACGTGGATTTACGAGCCGAAGGACGGAGACAGGATCAACATCGCTGTGTTTCACCCAAACTTTGATCCCAACTACCCCGACTCACCCGTGAAGGGCCGAGTCAGCTTCACGCCCAGTCCTCCAAACCTGGCCAGTCCCTCCATCGAGATAAGCAATGTAAGGATGACCGATGAGGGGAAGTACATCTGCGAGTATGCTACCTACCCCAGAGGCAACGAGCAAGGCATCACGTACCTCGTCATGCTGGCTAAGCCTCAGAACTCTGCCTCCATCGTAACAGTGGAAGCAGGCACTAATCCAGTCGTTGTGGCACGCTGTGAGTCTGTGGATGGCCGCCCCGCTGCCCAGATTTCCTGGGTGACCACAGCCAATGGCAATGCGACAACAGTGTCTAAGCCGGGTGCCAACAACACCGTGACCATGACCAGCGAGTACCACATGGTTCCCACAGCAGCAGACAACGGGAAAGACCTTAGCTGCGTGGTGGCACACAGGACCCAGGTCAAACCAGAGAGCTTTCCGTTGAAGCTAGCAGTACAACACGCTCCTGAAGTAACCGTAGTGGGTTATGACAATAACTGGTACGTGGGTCGTACACATGTGGTGCTCACCTGCCTGGCTAGTGGAAACCCCCCTCCATTGACCGCCCAGTGGAAGACGATGTCAGGAGAGATGCCAGACACAGTGCAGATCACAGATAACGTGCTGAAGGTGCTGAAGGTGGACAGCGCTGTCAACACCACTTTTGTCTGCGAGGTCGAAAACCGCATCGGGACCGGCAAGGACCAGGTCACAGTTTTTGTCAGAGATACTCGTCTTCCAGAGAAGGGTGCTTCTACAGGCAGCATCATAGGAGCCATCATTGGGGTCGTAATACTCTTGGCCATCATTGGAACAGCCATAGCGATGTACCGCAAACACAGTAACAAGAAACTCAACGGAGATGGTCCACCCAAGTACAAGCCCCCTCCCCCCAAGAAGACCACCAGCTCCGCTAGCAGACAACTGAACATAAGTTATGCCCCGGTGACTGAGGACAGACCTCTGCAAGACCAATACTACACTACCCGGAGTGCTGAGCCAGTCACGGACCTGGATGCCTACCATTACGATGATGAGAATGGCGAAGATGTGAGGGAGCATTATCACTCTGCTGCCCCCTCTGGCTGGGATGATCCCGGAAACAATGAGGTCCCTCCTCcttacatgcacacagacagcgACCCCCAGGACTATCATCAGGGCCCCAATGTCAAACGTGGGGAAAGCTTTGTGTCGCCCGCCATGTTTGTGTGAGAAGACACGGAAGaggcgtgtgtgtttgtatgtaaatatgtgtgcatgtgtgagtgtacATTTCTGCAGGCTTACATGAGAAAGGGATAGCTTGAGCAATGCAAATGCAAAATGTGAGGATGTGTGAATGTGAATTTTATGCTTAGCTACGAATTCTGAGGTCTGTGCTGCAAAGACAGAGTTCTGttttgccattttgtttaaaaatatttatctgTGATCAGGTTGCCACTACTATGAAATAATTGGGTTCAGTTGTATGTtgcttattttgaaaattaaacaattTTTAAACCTTGATCAGCTTGAGCCAGTATAATATAAAATGTTGCTAATGTACATTTACACAACTGTTTATACAGTGGCAGGGATATATTGAAACTGTTAATGTTCAAATGTAGATAAATCAAAGACAATGTCGTTTTAAATACCATATGCTGTGTATAAATGTTACCATCATAGTCAGGACATGAACACATTTTAAGTACACTGTTACATTACAATAGCAAGAGCATGTTTCAACTAAACTTCCTTGCATTATTGAATGTGGAGTATCGCACACATTATGGTTACTTACATAACTTGGTTAGCAGAAACACAATGCATGGGTACATGTTGCTTCTATCTAGTCGTATCTGTCTGCTGTTGTTGGTTTACAAACCCAGCTGGGATGAAGTTGGTGTAAAACAGGCATCCTTTGGAGAAGCTATTAGCTGCGGTTAATCAGGCAGCGCCGAAACGAGACTTACGAATCGTAATGGCATCAGGGTGTAAACTGCAGTGAGGGGGATAACTGCAGCAGCAATACTCTtatttgtgtaaatgtttgattttaatttttttttacttgtcttCTGCATCTGGCCTTTGCCTTCCTTGTGAAAATTCAGTGGCACATGGTTCACCTCAGGTGGAAGGGAACATAACTTGAGAGCTAGCAACTGATGAAACTTGATTTGTCTGTAGCCTTCTTGCTGTAACAtttgattgttgtttttttacttgcatccatccatccatccatccatcctccctTTTTGTGGATAtctgttactttaaaaaaactgtaaacttttttttttatttttcacttttgtctATGAGCATGCTCAGATGGATTAGGATAAATCTGGATTATGTCAATGAAATCTGTTGCAATTCATCTCTAGTGGAGGATTAGTTCTTCATGGAGTTTAGACAGGACACAGAGCCTGATAGTAAACTGATATGTCCATCCATTATCAGGGTCAAGGGTTAAACAGGTCAGTAAATGCTTAGTCCATTATTTTTCTGCTCAATCACAAACCCaaaggtgtctctgtgtgttggtgccaactggtttattttttatcaaataGCCTTTTGAGAAATGTGATCTATTTTCTCTTTTACTCAATTAAGATGTTAATTTTAATCTATTTTGCTCTTCGGGAATTATATTTTGAAAGTCATATTGACGGTTGTTGATTCAATAAACCTATTGTGATCTGGGTAAACAAGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101174 lncRNA upstream 91195 24295838 ~ 24296723 (+) True G75622
TU101154 lncRNA upstream 171349 24216140 ~ 24216569 (+) True G75611
TU101108 lncRNA upstream 262837 24122027 ~ 24125081 (+) True G75583
TU101106 lncRNA upstream 265909 24119317 ~ 24122009 (+) True G75582
TU101028 lncRNA upstream 314274 24073389 ~ 24073644 (+) False lpcat3
XR_005639733.1 lncRNA downstream 2816 24468834 ~ 24488842 (+) False LOC120562289
XR_005639731.1 lncRNA downstream 2817 24468835 ~ 24480123 (+) True LOC120562289
XR_005639732.1 lncRNA downstream 2817 24468835 ~ 24472842 (+) False LOC120562289
TU101229 lncRNA downstream 54747 24520765 ~ 24534169 (+) True dedd1
TU101237 lncRNA downstream 54747 24520765 ~ 24534169 (+) False dedd1
XM_039805662.1 mRNA upstream 22335 24351568 ~ 24365583 (+) True vars1
XM_039805663.1 mRNA upstream 22335 24354816 ~ 24365583 (+) False vars1
XM_039805687.1 mRNA upstream 41974 24342037 ~ 24345944 (+) True ino80e
XM_039805938.1 mRNA downstream 26897 24492915 ~ 24514355 (+) True atp1a3b
XM_039805939.1 mRNA downstream 26897 24492915 ~ 24514355 (+) False atp1a3b
XM_039805271.1 mRNA downstream 54717 24520735 ~ 24534276 (+) False dedd1
XM_039805272.1 mRNA downstream 54717 24520735 ~ 24534276 (+) False dedd1
XM_039806812.1 mRNA downstream 94047 24560065 ~ 24598707 (+) True pou2f2a
XR_005639925.1 other upstream 333590 24054272 ~ 24054328 (+) True LOC120563208
TU101013 other upstream 355473 24031390 ~ 24032445 (+) False atn1
TU100879 other upstream 508503 23873916 ~ 23879415 (+) False LOC120563047
XR_005639922.1 other upstream 619341 23768233 ~ 23768577 (+) False LOC120563204
XR_005639924.1 other upstream 620451 23767185 ~ 23767467 (+) True LOC120563206
TU101448 other downstream 449236 24915254 ~ 24989119 (+) False LOC120561858
TU101741 other downstream 1025796 25491814 ~ 25493157 (+) False apoc1
TU101746 other downstream 1036582 25502600 ~ 25504052 (+) True apoc2
TU101929 other downstream 1673883 26139901 ~ 26142627 (+) True G76192
TU102095 other downstream 2342100 26808118 ~ 26815391 (+) True G76315

Expression Profile