RNA id: XM_039805948.1


Basic Information

Item Value
RNA id XM_039805948.1
length 3480
RNA type mRNA
GC content 0.47
exon number 15
gene id ttyh1
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23036899 ~ 23058964 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACACGTTGCAGCCTTAACAGTGCTTTCATAGGCAGGAGTTCACTATCTTGCATCCAACATGGGAGTGGATTCTTTTTAAACATCTCCTTTCACTATTATTTAGCGCACACAGTTGGCTGCATTTTTACTCTTTCAGTAATCTGGTCAGGGTTCAGTGTGGTAGTCTGGACGGAGATTGGTCAGGTTGATGGGAGTGTGCATGAATGTTTGGTGGGGGTCGGCATTAGAAGTGCACCTCAGTATTAAGTGAGTGAGGGGTTAGACCCTGCTAATCCCTGTTAACAGATTAATTATCTTTGGGCAATATCGTGTTGCTGCCGTGTTGAGAAGTCACTTGGGCGTTAAGCTATGATGGGCTACAATGCAACGATAAAGGGTCCCTTAGGGGTGTCTCCTCAATCTtaatccctctctctctcattcactctctctctctctctctctctctctgtctgtctctctctctctctgtctctctcactcacttgcGCTCACTGAGAGCTCTTCTCATCCATCAACACAAGCACCTCTCCACTGTCACCAGACAACCCTACAATTATTGGCTATTTAATATTTCAATAACTGCAAGAATTATTggcaattttttttctcccattttcacatttttggcATGTCTCCAAGCCTTTTTTTCAGGATGATGTTTTTTCAAGAGCATCAAGCGTTGAAGGCTGGCAGTATACCTCTTTGAGTGGGTAAATATTTTACGGACACCAgcgaagagaagagaagaggagagaagaggagagggaacCTCCCGACACAACCGAGAGAGGGTGGAGGAGGGGGACCTGGCACAGTTGAAAATGGATGCCATGGCAACAGTACCCAGCTATACCCCTTCACTGTGGGTGAGAGTGTGTCACGCCCTCCCCCGGCTGGACCTCACCATGCAGATGAAGGACAACATCTTTGTCCCCGACAGCTGGGAGTACCAGCAGACTCTGCTGGTTTTGTCCAGTTTATCGGCCATCGCCCTCGTCATCTCCCTCTTGGTAGTCCTCTCCTTCCTCATACACTACTGTTGCTGTCACCGTGGTGACCGGAGTGAGGgatcagaggaggaggaggaggatgaagatgccAGCACAGGTCACGGTTACAGCGGGAAGAAGGGGCGGGGCATCTGTTGTGTCACATGGGTGGCGGTGGCGGCTGTCACGCTGTGCTGTGTTGCCATAGGCATCGGTTTCTATGGCAACAGCGAGGCTAATGATGGGATGTATCAGTTGACCTCGTCTCTTCTCACAGCCAATTATACACTAGCTTCCATCGATCTGCTGATTTCAGACACAATTTCTGGGCtgcagctgtctgtctctggccCCCTGACCTCAATGGAGGAGCTCTTTACCGGCAGTAAACCGTTCTTGGTGTCGACGCGGAACTGCCGGAGGTTATCTGAGAACGTGATCAACCTCCTGTCCTCCATCTCCATGGCTCGGGCCAGTGTGGACGCAGGCCTAGGGAATGACAGTATCAGCGGGGCGTCCATCATTCCTCTAACCCCAGTACCTCCCTCTGTGGCCCCTACAGTGGTGCCTACCATTGGCTTGATGCCCAGTCCCTTCTCACCTGGCTGGGCGGCCAACACGCTGATGGCCAATGAGGACTACAGGTGGCTATCAtacgtgttgttgctgctgcttgaCCTCATAGTGTGTCTATTCATCCTGCTGGGACTGGCCAAGCAAGCCCGCTGGCTGCTCATCCTGATGACTGTGCTGGCGTGGCTGGCTCTCTTCCTAAGCTGGGGCTCCCTGGGCTTGGAGACAGCCACTGTAGTGGCTCTCAGTGACTTCTGCTCAGATCCAAACACGTTTGTAGTCAACTCCACCCACTTCAACACTGGGACCAGCTCAGATGTGTTGGATTATTACCTGACCTGCAGCAGGCGCATGAACAGTCCGTTCCAGCAGCTGCTGACCCAGTCGCAAAGGGCGCTGtccaacattcacacacagctctCCAGTCTGGACAGAAATGCTCTCACACAGTTCCCAAAAGCTGAGAAATCACTCAGGGAGGTTCAGCAGATACTCAATTCCACAGAGGGCAACTTTCATCAGTTGGTGGCACTGCTGAACTGCCGAGGTCTGAATAAGgacTACATTGACTCTTTGAAAGGCCTGTGTTATGATGGGATGGAGGGATTGCTCTACCTCTCCCTTTACTCTTTCCTCTCTGCTCTGGCCTTCACTGCCATCCTCTGCTCTCTGCCCGGTGCCTGGAGGAGCTTCCCcagTGAATCAGAGGAGTACGAAGACTCGGACAGCGAGAGTGAGGACCCCTTCACCTCCCATCAGGACTCCAAACGTTTCCTCCAATGGCAACCCTGGCTATGAGAGCCTACCATTGACTGACAGGCAGTCCCCACCCCCCTCTTACTCTCCCAGCATGCTGACTGGTTACGGGGGAAGTCAATCACACCCTAACCCCGCCCATTCGAGGAACCTGTATTCAcgttgattattatttttttgttaggaaatgtatagaaaaaaaatgtttagttttcatATGAATGGACACTTTactgaaatgaaaaagaaactaATCTAAATGAAATGAATGCTAGGTGTCAATTCAAAGTGCGTTATGTCAGTACCactgaatattattattattagaagcACTTAAAAGAAACAGGTCTAAATGGACTGTTGATATAACCGACAATGATAATGCTGGTAGGATGGTTGTGCAAAGCTATGTACCAAGCCCACTTGGTCTAAATTCGTTCCCCTCATCTGTCCAAACTCTGTGTAAACTGTGAACAGTGGTGAGGCAAGTCAGAATGGTATTGACGTTACTACGTTGTAGTTTTATATTCTTAAATGTATCAGTACCAccgatttatttttatgtttttatataaatattgttgTAGAAAAGCACTGGCACGTAGCAACaagacacatttttttctgtggTTATGCAGTTCCTTCACTTggtatcatgtttttttattattactttttatagGTGGAAATTCTGTATTTTCCTTGTATTACCTTATGGTATTCTGTATATCTCACTGTCTATAATATCTGATTAATCAAGAACATTTGCTCTTAAAAAATACTTGAGGGCTGCCAAGACCCTGTTTTAATGATTGGACGGAGAACTACAACTGCCACTCAAGTCTTGAGTGGAGAACTACAAATCCCATGCAATGACAGCAGGTACATAGCAATATGATTCTTGCTACTGGTGCTGCAGTAGCCCTACCGTAACTAGCAATAATAACTATGTATAGCATTGGGTTTCTAAGATCTCTCCAAGatgttttgtgtatatatttggTCTGGTATGTTGGAGATTTCATTGAATCCCCCTTCCTTGCCAACTGACCTTGTTAACCCTTGAATTGAGTTTGTATGGTTATCAATGCTCCTTTTGAATGGCATCCTTTTACACTCAAGAgtctaatataaataaaaataacttcaATAACCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100419 lncRNA upstream 18323 23016807 ~ 23018595 (+) True G75077
TU100410 lncRNA upstream 42212 22994420 ~ 22994706 (+) True G75069
TU100406 lncRNA upstream 49596 22982892 ~ 22987322 (+) True G75065
TU100379 lncRNA upstream 111763 22924592 ~ 22925155 (+) True G75045
TU100374 lncRNA upstream 116815 22918752 ~ 22920103 (+) True G75042
TU100360 lncRNA downstream 20848 23079812 ~ 23083139 (+) False LOC120562293
TU100533 lncRNA downstream 84978 23143942 ~ 23144165 (+) True G75155
TU100574 lncRNA downstream 269278 23328242 ~ 23328629 (+) True G75192
XR_005639637.1 lncRNA downstream 272876 23331840 ~ 23332756 (+) True LOC120561704
TU100579 lncRNA downstream 280882 23339846 ~ 23342677 (+) False G75196
XM_039805889.1 mRNA upstream 849 23028718 ~ 23036069 (+) True leng9
XM_039805890.1 mRNA upstream 849 23028718 ~ 23036069 (+) False leng9
XM_039805892.1 mRNA upstream 849 23029114 ~ 23036069 (+) False leng9
XM_039805891.1 mRNA upstream 849 23029247 ~ 23036069 (+) False leng9
XM_039806443.1 mRNA upstream 29598 23004372 ~ 23007320 (+) True cdc42ep5
XM_039805954.1 mRNA downstream 4838 23063802 ~ 23070370 (+) True ube2s
XM_039805953.1 mRNA downstream 11623 23070587 ~ 23083147 (+) True LOC120562293
XM_039805952.1 mRNA downstream 11623 23070587 ~ 23083147 (+) False LOC120562293
XM_039805955.1 mRNA downstream 28211 23087175 ~ 23096445 (+) True si:dkeyp-69b9.6
XM_039805956.1 mRNA downstream 28211 23087175 ~ 23096445 (+) False si:dkeyp-69b9.6
TU100365 other upstream 134870 22900144 ~ 22902048 (+) False cnot3a
TU100082 other upstream 216865 22814044 ~ 22820053 (+) False myh14
TU100065 other upstream 369374 22660479 ~ 22667544 (+) False LOC120562537
TU100045 other upstream 413834 22616972 ~ 22623084 (+) False arnt
TU100710 other downstream 432161 23491125 ~ 23494023 (+) True LOC120562612
XR_005639923.1 other downstream 705351 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 708221 23767185 ~ 23767467 (+) True LOC120563206
XR_005639922.1 other downstream 709269 23768233 ~ 23768577 (+) False LOC120563204
TU100879 other downstream 814952 23873916 ~ 23879415 (+) False LOC120563047

Expression Profile