RNA id: XM_039805954.1


Basic Information

Item Value
RNA id XM_039805954.1
length 2169
RNA type mRNA
GC content 0.43
exon number 4
gene id ube2s
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23063802 ~ 23070370 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCCCATTGGTCGGTGGTAATAGGTTAAACTGATGATCGTATTTTTGTTCCTGTGTCAacgaaaagaagaaaagaagagtaGCCAGTGAGACCCGGCTAAGTTTTCATCAAagatagttttttttcaaacattaagTAAAGGACTCTTCAAATCTCAAACCAGCCAAACATCCAACGCCTTAGCAGAACCCCTTTTGAAGATGAACTCCAATGTGGAGAATTTGCCTCCTCATGTTCTTCGCTTGGTCTACAAAGAGGTTtcagctttagcagcagacccGCCTGAGGGTATCAAGATTTATCCCAGTGAGGAAGACATAACTGAGCTACATACAGCCATCGAAGGACCGGAGGGAACTCCGTTTGCTGGTGGCGTTTTCCGAATGCGTCTGGTCCTCGGGAAGGACTTCCCTGCGGTTCCACCCAAGGGGTATTTCCTGACTAAGATTTTTCACCCCAATGTGGGTCACAAGGGAGAGATCTGTGTCAATGTGTTGAAGAGGGACTGGAAGGCAGAACTCGGCCTCAGACATGTCTTACTTACAATAAAGTGTCTTCTCATCCATCCGAATCCAGAGTCTGCTCTGAACGAAGAGGCCGGGCGTTTGCTGTTAGAGGACTATGCAGAATATGAGTCCCGAGCTCGTCTGCTCACAGAGATCCACGCCATGGGGGGGCACGGCGGGACCTCTGGGGCACCTCAGGACCCTAATGACGGCCCACAGCCGAAGAAGCATGCAGGCGACCCCATGAAGAGAGCGGGACCCAGTGCAGCAGCTGTGCCAGCAGCTCTGGGTAACGGAGCTAATGGAGCCAGTACTACCACCAGCAATAGCAACAGCAGTAGCACTAATAATGTAGCAGGGAAAAAGAAAGCAGATAAAAAGCGTGCATTGAGGCGACTTTAATACCTCAGCtaaattctgtgtgtgtgagtgcgagaatgtgtaaatataaatattgaaGTGTGCTGACAATGTTTTTGTTCCCTTTTTCTGACTCTTTCTACCACCTGTCCAGACTGTCCACAACTTGTGTCTTGCCACCAGTTTGTCCTGTTGGCATTACAGGTTTGTTAATTATTTCCATACCTAAAGACATAATGATAAAATgtttgttcctcttttaaagGAAAGACAACACCTTCACTGCAGAAATCATGCCATCTGTTGTATTTTGCTCTTGGCCTAGTGTGTATGAATTATACAGGGAATGGGTTTCACTGTGCAAAATATGGCCTCTAATGTCTGTCCACTAATGAGACAAAACTATTATTGTCTCAGACTTGATATCAGCTCTTTTTAAAGTGTTTCTTGGCAAATGCTGCTGTGATGGTACTGTGTACTGCTCAGCCAGGCTCACTTATGAGTCCAAACCAGGATGTTACTTTAATTAAAGTCAGGTTTTCAAATTGAACTCAAAGGAAATAATAAAGAAGTTGCTAAATAATTGTGCACAAAGTCGGTGGGTTCACTTTTGGGAGAGAAATATTGTCAATATCACGCAAAATTGTAACATCTTTTTAAATAGTATTTTTCATATTGTGATCTGAATGATACAGGTATGGAAAAAGTTGACAGTGGAGTATAAGAGGTCTGTCGTgttctgtaatttttttttattttatttttctaaaattgtTTCACTGTCCAGTATTTTCAGAAGTTGTTTAGATTGACATGTTCATATTCAGCTGTCTTGTGGTTGTGTGAAGACCTAGATCAGTGGCTGTAAGGGAACACAGGGTGGGTTGCCAGACTACTTTTTATAAAACCAATGAATCGCCTATTCTCTGTATTAAGCATAGATTGGTGTGACTCGCTTAACCTACCCCTGATTCCCTACAAAGCAGTATGTGCTCTCAGATAACCAGCTCCCCGACAAGCCATGTGGGTACCTGAGAAGACATCTGTAGGAGAACTTCCACGTTTGATAGAATTTGTCTCCCCACCCGTTGCACTGGCAGGGTTTCCGGGGCAGGTTTTCTCTTTGTACTAAATGCATGCGGGGCCTACATTTCCCAAGGAAACACACTGAAGCGCTGTCTTAATTTGGACGGAAAATGTGCCTCTGAATCTCTGTCATTGTGCACTTGGCTGGATATTTTGTGtccattttaaattatttaaattaaacattgaaATACAAGAAGTGAAATTAAAAATGAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10583 UBE2S, E2EPF; ubiquitin-conjugating enzyme E2 S

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100419 lncRNA upstream 45207 23016807 ~ 23018595 (+) True G75077
TU100410 lncRNA upstream 69096 22994420 ~ 22994706 (+) True G75069
TU100406 lncRNA upstream 76480 22982892 ~ 22987322 (+) True G75065
TU100379 lncRNA upstream 138647 22924592 ~ 22925155 (+) True G75045
TU100374 lncRNA upstream 143699 22918752 ~ 22920103 (+) True G75042
TU100360 lncRNA downstream 9442 23079812 ~ 23083139 (+) False LOC120562293
TU100533 lncRNA downstream 73572 23143942 ~ 23144165 (+) True G75155
TU100574 lncRNA downstream 257872 23328242 ~ 23328629 (+) True G75192
XR_005639637.1 lncRNA downstream 261470 23331840 ~ 23332756 (+) True LOC120561704
TU100579 lncRNA downstream 269476 23339846 ~ 23342677 (+) False G75196
XM_039805947.1 mRNA upstream 4838 23036899 ~ 23058964 (+) False ttyh1
XM_039805946.1 mRNA upstream 4838 23036914 ~ 23058964 (+) True ttyh1
XM_039805948.1 mRNA upstream 4838 23036918 ~ 23058964 (+) False ttyh1
XM_039805889.1 mRNA upstream 27733 23028718 ~ 23036069 (+) True leng9
XM_039805890.1 mRNA upstream 27733 23028718 ~ 23036069 (+) False leng9
XM_039805953.1 mRNA downstream 217 23070587 ~ 23083147 (+) True LOC120562293
XM_039805952.1 mRNA downstream 217 23070587 ~ 23083147 (+) False LOC120562293
XM_039805955.1 mRNA downstream 16805 23087175 ~ 23096445 (+) True si:dkeyp-69b9.6
XM_039805956.1 mRNA downstream 16805 23087175 ~ 23096445 (+) False si:dkeyp-69b9.6
XM_039805957.1 mRNA downstream 28919 23099289 ~ 23108067 (+) True dbpb
TU100365 other upstream 161754 22900144 ~ 22902048 (+) False cnot3a
TU100082 other upstream 243749 22814044 ~ 22820053 (+) False myh14
TU100065 other upstream 396258 22660479 ~ 22667544 (+) False LOC120562537
TU100045 other upstream 440718 22616972 ~ 22623084 (+) False arnt
TU100710 other downstream 420755 23491125 ~ 23494023 (+) True LOC120562612
XR_005639923.1 other downstream 693945 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 696815 23767185 ~ 23767467 (+) True LOC120563206
XR_005639922.1 other downstream 697863 23768233 ~ 23768577 (+) False LOC120563204
TU100879 other downstream 803546 23873916 ~ 23879415 (+) False LOC120563047

Expression Profile