RNA id: XM_039805955.1


Basic Information

Item Value
RNA id XM_039805955.1
length 6990
RNA type mRNA
GC content 0.48
exon number 3
gene id si:dkeyp-69b9.6
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 23087175 ~ 23096445 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGCTAGTGCTACCCGGAAATATTACAAGGGCCGGAAAGGACCGATGTTAAGGGAGCACACGTCACTCACTTTTACCCAAAAATATTATCACCGACCATCCAAATTTTCTCGGCCGTCGAAATCTTTAGTGAAAGGTCCCTGTCGACGCAAACGGCCGTAATCAAATGGCAAGGAGGCGCCTGCGGTATCCGTCGGCGTTGATTTCTTGTGGAAACCGTGTAAGTGTTCACGCAGCTCAGCATCAGTGAAAATGGCTCTGGCTAACGACTGGAAAACAGCACGCAGAAATGGAAGCGGACGATAGCTAGCTAGGCAGTTAGAAGAAGGCGTGACAGGCCTCATCCATCTGCAACTCGATGCTTAGGATTGGTGATTTTCATTAAAATGAGAGGCGGTGAAATATGCGATAGATTATCTCCCTCATCTGCCAGGGGAGCTCACTCCCCACTAGGTTCATCGCTTCGATTAGAGGAAACGCTGTAGGAACTTCTTGCCTGAACACGGATGAGGAATCTTGCTTAGATGAAGGATAATGTCAACGCTGTAACTCTCAAGGGAAACAAGAAGTCATTTGAACTGCTTCTCGATAAAAACTATTCTAAGCAATTTTGAAATTAGGTGGAACTCATCTACCTGTCTAAAAGACACTTTTACCCTTTGATCATAAACTCATCTTCCCGGCCACCCCACTCATTTGGAAGTAGAGTGTGGGCAGTGGATATTCAACAGGGAATAGCCGCACCAGAAGTAAACAATCTGGAGAGACGAACTTTAGATTTGAGACATTCAAGTAGTGCTGGAATAAATAGTAGCATAACCGCACCCTTAGGGTAAAGTTTGTCTTTCACCAGTCAGTGGTGGAATCACTGTTGCCACTCCTAGTGCTGGAGGTTGGGCCCCTGCACCCCCATGTGCCAGTGAGTGGGAAATGTTCCAATTTGGAAAATACAATCTGGACATTATAGAGATGTTAAGTGGGCACCAGGCCCACCAGTTTAAAGGCCTTGGTTTAGATCGACAACTACAGCATCAACAGCAAGTTCAACTTCACCAGCATcaactccagcagcagcagcagcagcagcaggctgaaTCTTCTGGAGCTCTTCTGTCTGGACTTGGCTTGGGACCCCTGCAGGGGTCAAGAGGTAACGCCTTTTCTGATTCTGCCTCCATTTTTGCCAAGATGAGTGCCCCTCCTCCCCCACCTTTACAGCAACAGCCTTCCTCATCTCAGAGCTCTCGTTCAAAGTCAAGCAAgatgagcagcagcagctcaagCCATTCATCAGGCTACCCACAGTTCCTGCGCTCTTTCCACCCGTCTGAGGCAGCACTAGCACAGGAGCAGTTACACCCAGGTGTAGGCCGCTTTGAGCACTTTGCTGGGGGAAGTAGCAGTAGTGGGAGTGCTGGGGGGTTAGGAGGATTAGTAACATCAGCACCtccgccccctcctcctctgcaCCCCGGCCTCTCTGTTCCTCAAGTAACATCTggtccctcctcttcctctccttcccctTCAACATCTGTGGCCACCTCTAATAACCCTTCAAGCAGCAGTGCAGTCAGCTCATTGGGACACCAGTTGGTTGGGGCCCAGTCTGATGCACGAAGCCTTCATCAACAATTTAGTTGCATGTTAGCTGCTAATCAGTATTTCCTGTCTGGGGTACCTGCTAATACTAGTTTAGAGCAATTTCTTGTTCAACAGGGAACGCATAACCACTTAGGGATTGGTTTAAGTCAGGCAGCCGGGGAGCCTAGTACTAGCCTTGCTCCGCCTCCTGCTTTGCATTCTTCTCACTCACATGGCCACTCCACTCCCCAGTCACAGCAGGGTCCACAGCAGCCGCCCCAGCAGCAACAGCTTCCACCTCACACCCTTTCTCATCCTCACTCTCATTCCCATCACCACCCGCTCCACCCAGGCTCTCAGCCCTCATCACTGGGTGGCTTTGACTTCCAGGGCATCCCTGTACTCTCATCAAATCAGATAGCTTCTCTGATGCAGCAGGAAGCAGGTTTGCCACTCCCCTTGCCACTTCACTTATCTTTATCAAAGGATGATGGTAAAGGGGAAAGCAGTGGAGGTGGAAGTAGTAGTAGCGGTGGCAGTAGCAGTAGGAGGAAGAAAGCTATGGCTGGCTATTTGCCACAGAGAAAATCTGATAGCAATAGtaatagcagcagcagccatggcCATGGTAATCCCACCACTAGTAGTAATGGTGGAGGGCTTAGTCATGGTCAACCCCCAGCTTTAATTGGGAGTGGGGTTGGTATGTCAAATATGGGTGGATCCCTTCTTGCctcatcatcttcatcctcatcagtagtttcttcctcctcctcctctgctccctCCTCCACTGCTGCCTCAGTACTAGTTACTAATGATTCTCACCTCTCTAAATCTGATAACCAGAGCTCAATGCAAGCCAACAACACAGAGTCTGATTCAGAGCCTGTTTATAGCTGTGGAGAGTGTGGCAAAAGCTTCCCCCACCTTTCAAGCCTTCGCAGGCATATGCGCATGCATGAGCCAACCACAGCAGGTACTAGCAATTCTTCCACTACTGGCCCAAACCCCattcacattaaaacacagtctGACCCAAGCCTTCCCCATTCGACCCAGGAAACTCCCCAACCCTCAACCAATTCTTGTCCTAGCCCAGACAAAATATTTCATTGCTCTGATTGTGGCAAAGGCTTTAAGAAAAAAGGGCACCTCCTGCAACATGGTGTTATACACTCCACAGCCCGCCCATATGGCTGCTCCACCTGCTCTCGGGCTTTTAATCGTAGAGAGTCACTGACACGCCATGAGAAGATACATGAGGAAAAGCCATTCCGATGTCCCGCCTGTGGTCGTGCCTTCCGTGAGAGCACCTCTCTACTCAACCATGCTGCCTCAGGCACCTGCGGCAAGCCAGGTAGGGGACCCAAACAAAGGGGCAGCAAGACAGGATCTGATGGTGAGGACAGAGTCGGGGGAGGGTGTGGAGGAGGTAACGGAGGAGGGGGAACTTATCAGAGCAATAGAGGGGTTATTTATGGGAAAACTGAGGAAGAAGATGGTGTAATCATTGTGGGGGAAGGAGAACCAAAATCAGGTTTAGGATGTGATGGTCTGTTTCAGTCTGGAAGGGGAGGGAATTCAAATGACAGGGACAGAACAGATGCTAAATACCCCACTGACTACTCTCGGAATCGTTACACAGGCTACCATGATGACCATCGTTCTCAAGGTAATCCATCTCCATGCTACTCTGGTGCCTCCCCCTGTGGAAGTGGGATGGCGGGCCCAGCTCTGAGAAAGGCACCCTTGGCTCCAACACTGCATCCACACTCACAGAGCCACAACCAGCATCACcatcagcagcaacagcaacagcccCACCTGCCCCTTTCTTCTCTACTGGATGACTCAGAGGATGATGTCACTAGCTCTGTCAATAATGCAATATCTGCTATAACAGCAGCTAGTAACAGTGGCAATAGAGGGGATGATAGGGGAGACATCATAGGAGGTCTGCTAGGTGGTCTTGGTTTAGGTCCACTGGGCTCACCTTCATCAACATCTAATATGGATAAGAATTTCAGAGGTGGTGGGAGCCAGGAGGCTATGAGCAGCAACCCACAGAATCCTACTGCTAAACCAAAACGGCCCCGCAAACCCAGAGCTAAGAAAGATCCTGCAGCTGGTGGACAGCCCCCCAAACGTAGGCAATACACCCCCAGAATGGGGCCCAGTGGCCTCCCACGCACTCACCTCTGCAGTGTCTGTGGTAAGGGATTTGCACGCCGTGAGACCCTACGCAGGCATGACCGCATCCATACTGGAGAGAAGCCCCATCACTGCACTGTTTGTGGAAAGTATTTTAGAGAGGCATTTCACCTCAGCAAGCATCAAACCGTTCACTCTGGGGCGAAGAATTACAAATGCAGCATCTGTGGGAAAGAGTTTGGTTACTCCCAGAGCCTCAGGAGGCACAGCAAACTCCACCAAAAAGGGGAGCTGGAAGAGGTGCCCACAACACCAGCAGTGGAAAACCTTAACAGCTTTAACTCAAACCCTcaatgtagcgtggcccaggaCAGGAGCCAGAACCAAGCACCAAGCACCTCCTATTACTCCTACCCTCAAGACGTCAAGCCTCAAGACACCAATCCCCAGCAACAgcctccacccccaccccacccacaGCCCCCACCTCCACCTCGACTCTACACCTGTGCTATATGTTGGAAGTCGTTCCGTCACCACTTTCATCTGACCGCCCATCACCAGACCGTTCACGAAGGTGGGGGTGAAAAGCTCTTCTGCTGTGAGGTGTGTGGGAAAGCATTTGCTTACGCTAACAGCCTCACTCGACATAGGCAATCGCAGCATGGGATGACCCGCACTGAACCGCCTAACCCGCAGGAGGGCGGCAGTGGGTCAGGAGACAACCGAAGTCAGAGTGATGTTAATCAGTCAACATCAGAGAGTGAGGCTGCCACCAATGCCCTGCTACAGATGGCTCCTTCCACAGAAGGCCATGGAGGGCAGAGTCTTAGTGTTGTCACTCATAGCCACCCGCAGCCACCCCCGCAACCACCAGCTGGTTACTCTCCCCTCTTTTATGATGCTGCACCCCAGTCTTCAGCCTCTAACGCTCCATCTTACTCGCAGCCTCTGCCTCCAAACTCTACGATCATGGCCCCCCAGCACCCGCATTCCCCAGCCGGGGTTAAAGGAGAGCACATATACCCAGCTGGATCCCGTAGCCGTACACTCCACACCACAGCCCCGTTCCAGCCCCTCACGGAACTGCCCTCCACTGAACATCATCATCTGCATCAACATCATCATATCTCCcaccatcatcttcatcatcagtCAGGTACCCAGTCTCACCAACACCTTGACTGCAGCATCCAGTTATCGCATGATGAAATGAGacgacagaagaagaaaaaaaaaaagtccaacaGGAGGGAATATAAATGGGGATCCCAAGATTTTGTCAGATTTGATGCaagcaaaaagaagaaaaagataagTTGTACAATAAGAGGGcagttgaataaaaaacaaGGCTCTCTTCGTTTGACAATTAGGCGAGGAGAAGGATCAGGTGGTGGTGGGTATAAGCTTGTCAACACTGGGGGAATGAAGGTGCAGATCCTCTCATCTCTCAAAGTCCCTGTGAAACGCTTCGGCTGCCCTATATGCCCCAATTCTGTGTTTTCCCGTAAAGCGGGACTGCTAGTCCACAAGGCAGTTAAACACCCACAAAAAGCCTCGACGACTCAGGAGCGACTCAGGTGCAGTGTTTGTGGGAAGCAGTCTCACAGGCCTTTGGCAGCCTTCATCCATCGAGCCTCCCATCGTGCCAGAGGGACTTTCTCCTGCCGACGCTGCTCCACTCGCTTCTGGAATGCTACACTGCTCTACAGACACAAGGTGTCCTGCCGCCGCAGGTCTAAAGGCCTGCAGCGAGGAGATGCTAACAGGTTGAAGCTTTCAAAGAGACCAGGAGAGAGACAGGCCCAAGAGGGTCAGGAGGAGATACCATACCTACAAGGACAATACAGATACTGAGCATCCTGGTATCTGAAACAAGTGGCATACCATAGGGGTATTTCAGTTCTAAAATGGGAAGGTGAGAAAAAAAGGGACTTGAAAAGGCAATGCTGCCTTTTAGCAACATTTTACTTTTGTCTCTGTTGACATCTACTCTGCTGACTATTAGAATGAGTGTGTTAACAACTACTGTAGAGCATCCTATAAACTATCACCAGAAATTCTTCCAGATCATATTGGAAGGTGTTTTCAAAGACGTGACTGTTTTTCATAGGTTCATTAACCCCTTAAGTGCATTGACACTATGCTTGGCTGACACTGTGCAGTTACTAGACAAGTTTAGGTGTAATGACCTGCTAATGTATCTCTCTCCCCCATAACTAGACTCCCTGCTAAACCTCATGCTGTATGATAAACGTCTCTGCTGTGTActttgtcttgttgttgttcACTTAGAGGCtctgaggattttttttttttttttatgtaaagtgCATATATTAGGAGTAGGGACATGAGGACAAATAACTTTTGTTGATAGTTTGTCAGTGCATGTTTGTTCTCTGGTCAAGTTTTTGCTGAGGTTGTGAAATAACTCTTACAGTATGTGATGGTTTATTCAGTATATCCCCAGAAGTTTGTAGTGGTAAACTTGATTTGAAAGTTGCTCTATATTCCCTAGTGATTGAATCACACATAGATAAATTGTCAAGGTTGCTGGTAATTAGCATTTCAAGGATCCCTCTCCTGCCAAAATGTACGAAACTTACAAAAAGCCTTGCTTAGTATGTTTACTTTCCTTCATTTATTTGAGATATTCCTACAGTAGCTTTTATACCAAGAGATTGAAAATAGGTTAAACAAGTGGACTGTAACACATGTTTATCTCATGTTATTTGTATGCTCTTTTTAGCAGTGATTATTTCTACAGTACTTCACGGTGTGTTAAAGACAAGGACCTATCGTAATAGAAACAAATTTAATATTccatgtatttatgtgtgtaacCCAATCAGTCTTCATGCCAATCTTATGCTTAACCCCTTTTACTTTTTGCTGATTTGCAATCATATTCTTACTGTCAagccttgtttttttcttctaaagaAAAATAAGTTTTAAGTACATCATGTCACTTTATTCACATGAAATGTTCATACCCCTGTCAAGccttgctttttttcttctgaagAAAAATGATAGTTTTAGTAGATTTATATCACATTATTTACTGAGAAGTCAGTAGTTGATTATATTTCAGCAATTAATAAACCTTAAGTGTAatcatttgttttcctttttatttctcattCAAAGTTACCCACTACAATATCCAGAAGATGGTACAAACTGGTGGTCATGAGTACGTTGTAACAGTTACCAAAGTCAGTATTAAAGTTTTACAATTATA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100360 lncRNA upstream 4036 23079812 ~ 23083139 (+) False LOC120562293
TU100419 lncRNA upstream 68580 23016807 ~ 23018595 (+) True G75077
TU100410 lncRNA upstream 92469 22994420 ~ 22994706 (+) True G75069
TU100406 lncRNA upstream 99853 22982892 ~ 22987322 (+) True G75065
TU100379 lncRNA upstream 162020 22924592 ~ 22925155 (+) True G75045
TU100533 lncRNA downstream 47497 23143942 ~ 23144165 (+) True G75155
TU100574 lncRNA downstream 231797 23328242 ~ 23328629 (+) True G75192
XR_005639637.1 lncRNA downstream 235395 23331840 ~ 23332756 (+) True LOC120561704
TU100579 lncRNA downstream 243401 23339846 ~ 23342677 (+) False G75196
TU100578 lncRNA downstream 243647 23340092 ~ 23342677 (+) True G75196
XM_039805953.1 mRNA upstream 4028 23070587 ~ 23083147 (+) True LOC120562293
XM_039805952.1 mRNA upstream 4028 23070587 ~ 23083147 (+) False LOC120562293
XM_039805954.1 mRNA upstream 16805 23063802 ~ 23070370 (+) True ube2s
XM_039805947.1 mRNA upstream 28211 23036899 ~ 23058964 (+) False ttyh1
XM_039805946.1 mRNA upstream 28211 23036914 ~ 23058964 (+) True ttyh1
XM_039805957.1 mRNA downstream 2844 23099289 ~ 23108067 (+) True dbpb
XM_039807216.1 mRNA downstream 12336 23108781 ~ 23117768 (+) False ntd5
XM_039807215.1 mRNA downstream 12337 23108782 ~ 23117768 (+) True ntd5
XM_039807223.1 mRNA downstream 21484 23117929 ~ 23123313 (+) False LOC120563112
XM_039807222.1 mRNA downstream 21653 23118098 ~ 23123313 (+) True LOC120563112
TU100365 other upstream 185127 22900144 ~ 22902048 (+) False cnot3a
TU100082 other upstream 267122 22814044 ~ 22820053 (+) False myh14
TU100065 other upstream 419631 22660479 ~ 22667544 (+) False LOC120562537
TU100045 other upstream 464091 22616972 ~ 22623084 (+) False arnt
TU100710 other downstream 394680 23491125 ~ 23494023 (+) True LOC120562612
XR_005639923.1 other downstream 667870 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 670740 23767185 ~ 23767467 (+) True LOC120563206
XR_005639922.1 other downstream 671788 23768233 ~ 23768577 (+) False LOC120563204
TU100879 other downstream 777471 23873916 ~ 23879415 (+) False LOC120563047

Expression Profile