RNA id: XM_039805961.1


Basic Information

Item Value
RNA id XM_039805961.1
length 2274
RNA type mRNA
GC content 0.51
exon number 7
gene id faxcb
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 2661896 ~ 2692862 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCCTTTCCAAGACGTGTCCACACACGGGGATGGGACAGTCCCATCCTCTTAAGATTATAATGGGACTCATGTGGAAGGATTATATAATACAAATCAAGCCTGTGGCGGAGAATTAGTTATGCTTGCTTGCATGATGTTCTTAGAGAGACCAATAACCAGGCCGTAAGTGCTTGCAAAGATGTTTTTCTCTGATGCAGAAGCTAACAAAACACACTTTGTGGGTTGATGATAATTTTCAGATACTTctgttatttcacattttagaagTTATCAAATGTGTATAAGGTTGACAATAATAACCACTGTGTTGATTGtctaaaattataataatatataataataaaaaattaaatgggAAAACCTTTAGAACTGCCACACAGTAGTGTCTGCAGTGGATTTTTTCCCACAGTGGTTCAGCTGTCTACAATAACAAATCCCTCCTGCTCTAATGCGCGCTCCCTAAAGCCGCGGGAGAGCGCACCTAACTGGCTGTAGCCATGGCTGCAGTGAGGACTTTAAAGTACAATCACCTAAATCACATAGATCAAATCCACATCGTCACTTCATCCTGTTCTTTTTAAACACACCAGCTGTTATCGACCAGGACCGAGTGTTACCGGTTGACCGGaggatttgatttgatttactGGCATCAGTGTGCCACCGATAGTGCTGTAAGCTAGGACTTTCTTAGTCTTTTCTTGAAGTTGTCCACATCTACCTTTCGGCATGCTCCACAAACCGATTCAAAGAACAGCCGGGGGATTTATCCGTCAAGATGAATGTCTTCTTACACTTCCGAAGTTGTTCCAGACTTGACAGCGCTCTGTAAAACCTGCAAAGGGAACGACTGAGGGGTGCAGAGCATCATCCAGCTGGGGAGGGCGAGCCGAGATGTTTACACCTTCTGATTTTCTGGAGAAACGTTAGCCACACCGCCGCCATGCCGTAGACAACCCGCCGGCTGTTTAGATGAAGCCTAACGGGGACTACAGCAGGAAGGGAGCGGGGCGGCTGTAACCGAGGGAGAGAGGATGTACTGGGCTGCTGGCTTCGCCTCTTCCCGGCCGTGCGTGGTTGAACTCGGGCGGAATCACAGCCTGCCCCTCGGGCTGTGCGGCTCCGAGCAGCAGCAGTCTTTGTATGGCTATATCATCGCCTTCCCTTTACAGGACTACGGGGGCATTATGTCGGCTCTGGGATCGGACTCCTGGTGGAAGAAGACTCTGTACATCACCGGGGGGGCCCTGCTGGCTGCTGCAGCCTACCTACTGCATGAACTGCTCGCCATCAGGAAGGAGCAGGAGTTGGACTCTAAAGACGCCATCATCCTGCATCAGTTCTCCAGGCCAAAGAACGGCGTGCCCAGCCTCTCACCCTTCTGCCTCAAAATCGAGACATACCTGCGCATGGTGGACCTGCCCTACCAGAACTACTTTGATGGGAAGCTGTCGCCGCAGGGGAAGATGCCCTGGATCGAGTACAACCACGAGCAGGCTTCAGGGTCAGAGTTCATCGTAGACTTCCTGGAAGAGAAGCTGGGTGTCAACCTCAACAATAACCTCACGCCGCAGGAAAGAGCCGTGTCCAGAGCGGTCACCAAAATGGTCGAGGAACACCTGTACTGGACAATAGCCTACTGTCAGTGGGTGGACAACCTGGAGGAAACTCAGAAGCTTCTTGCGATGAGCGGTCCCCTGAGTGACACGCTGAAGTGGCTGCTGAGCCACCTGAACGGCAGCATGGTGCGCAGGGAGATGTATGGCCATGGCATCGGACGCTTCTCTAAGGAGGAGGTCTACGCTCTGATGGAGAAGGACATGAGGACGCTGGCCACACTGTTGGGAGATAAGAAGTACTTCATGGGCTCTAAGATGTCGACATTAGATGCTACAGTGTTTGGGCATTTAGCCCAGGCTATGTGGACTCTGCCCGGGTCACGGCTGGAGCAACTCATCAAAGGAGAGTTGATCAACCTGGCCATGTTCTGCGAGCGGATGCGAAGGAGGTTCTGGCCCGAGTGGTTTGTGGATGTGGAGGATCTTTATTATGATGGAGACAGTGAGAGCAGCGGCGGCGGCTCACCTACAGGCTTTGGCATCTTCTCCAGGACTGACACACTGGACGACAGTGACGCCAGCAGCCACTCGGccggacacacgcacacacactcccccgACTCTGACCACTCGCTCTTTGACTCGGACGTGGGCACGGGATCTGAAAATGACATTCAGCTGAAGGAGGAGTTAATTCCCAACCTGGAGGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93863 lncRNA downstream 20883 2643873 ~ 2644416 (-) True G70094
TU93861 lncRNA downstream 27011 2638062 ~ 2638288 (-) True G70092
TU93846 lncRNA downstream 53495 2610352 ~ 2611804 (-) True G70081
TU93857 lncRNA downstream 56401 2608242 ~ 2608898 (-) False G70090
TU93952 lncRNA upstream 34306 2727168 ~ 2735236 (-) False usp45
TU93954 lncRNA upstream 41087 2733949 ~ 2735724 (-) True G70155
TU93958 lncRNA upstream 47457 2740319 ~ 2750986 (-) True G70156
TU93956 lncRNA upstream 49063 2741925 ~ 2753247 (-) False G70156
TU93957 lncRNA upstream 57026 2749888 ~ 2753268 (-) False G70156
XM_039806798.1 mRNA downstream 29641 2613872 ~ 2635658 (-) False fbxl4
XM_039806795.1 mRNA downstream 29724 2613872 ~ 2635575 (-) False fbxl4
XM_039806799.1 mRNA downstream 30143 2613872 ~ 2635156 (-) True fbxl4
XM_039805147.1 mRNA downstream 345894 2294541 ~ 2319405 (-) False mms22l
XM_039805146.1 mRNA downstream 346727 2294541 ~ 2318572 (-) True mms22l
XM_039805964.1 mRNA upstream 137 2692999 ~ 2712717 (-) True coq3
XM_039805966.1 mRNA upstream 20581 2713443 ~ 2721790 (-) True pnisr
XM_039805969.1 mRNA upstream 34306 2727168 ~ 2818027 (-) False usp45
XM_039805970.1 mRNA upstream 34306 2727168 ~ 2818027 (-) False usp45
XM_039805967.1 mRNA upstream 34306 2727168 ~ 2818027 (-) True usp45
TU93283 other downstream 1932551 729924 ~ 732748 (-) False osr2
unassigned_transcript_293 other downstream 2636616 28610 ~ 28683 (-) True trnai-aau_14
unassigned_transcript_292 other downstream 2636973 28254 ~ 28326 (-) True trnar-ucg_8
unassigned_transcript_291 other downstream 2637982 27245 ~ 27317 (-) True trnar-ucg_7
unassigned_transcript_290 other downstream 2638669 26557 ~ 26630 (-) True trnai-aau_13
TU94269 other upstream 936271 3629133 ~ 3629818 (-) True G70407
XR_005639920.1 other upstream 1286449 3979311 ~ 3979414 (-) True LOC120563202
TU94368 other upstream 1379462 4072324 ~ 4077779 (-) False eny2
TU94369 other upstream 1379462 4072324 ~ 4077779 (-) False eny2
TU94370 other upstream 1379462 4072324 ~ 4077779 (-) True eny2

Expression Profile