RNA id: XM_039805980.1


Basic Information

Item Value
RNA id XM_039805980.1
length 4717
RNA type mRNA
GC content 0.53
exon number 39
gene id LOC120562315
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 16732632 ~ 16816257 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTCCCGGCATCGCATCGGCTCGTGGGCTGCCGCATCACCGAGCGGGGAGGGGCCCCGGTTTCCACTATTGGCTGCAAGACTACTGTATTACCGAGAGCTTTACGGTAGGGCCACGGCCAGCGACGGTGTGCGCGAGCGGTTGTCTTCTCATCTCCCTGGAGCGCAGAATCTGCTGGGTTTCAACATGATTTTAAGGCGGCTTTAGCgagtgtttttcctttttttcctccagcaTACAACCTCTAAACCctgtttaaacaaaaaaaaaagagatgcgCCCAGATAAACGCGGATACATTGTCCGGACACcgcgagaggaggagaggagcatGTAACCGGGAGAAACGCACCGGCGGCGGCGGCACCACCTGACACTTCTCTCTCGTGCTCCTTGTTTCCTCATAATTTGAGGCTTCTCGGTTTGTTGACTGAACTCTTCTCGTTGTTTCGGATATTATCTTCAGTAAAATGAGCGAAGAAGTGTCAGAGGTCCCCAAAGAGCTCCTGGAGAGTGTGAGGGATGCAGTGGGGAGGAAGGTGAAACTGTCGCTGAGGAGGCGAGTCAAACTGGAGATCAAAGGAGACAAGACGGAGAACAGAGTCTTGgcacTTGCGTCTCACCGGGCCTACCTGCTGACTGCACGCATTCCCACCAAGgtggAACACTCCTTTAATTATCTGGAGATCCAGGGGATTGCTTGTAACAAGCCTACACAGCTGTTCATAGAGTACGAGCGTGGCTCCTTCTCCCTGAAGCTGCTCTCTACAGAGGAGGTCAATGATGTGGTCGCTCACATAGGAAACTGTCTGCTAAGGATATGTCCCGGTCTACCACCTAGTAAAGTGATGAAgaagctctgcatggagcctccAGACAGGCTAACCTCTCTGCAGACTCTGTGGGAGAACAACAAGCCTGCTGAGCCTGGACCCTGTGGTGGGTTTTCTCAGATGTACAGATGTGTTTGTGACTGGTTGGGGCTGCCTTACAAAGAAGAGGTGCAGTGGGATGTAGACACCATCTATTTGACACAAGACACCAGAGAACTCAACCTGCAGGACTTCAGCCATCTGGAGAATAGGGATATGGTGGCTATAATAGCAGTCCTGGAGTTTAACCAGTGGTTCACCAAGCTCTCCAGTAAGGACTATAAACTGTCTGCAGATGTGTGCGAGCAGATTCTTCGGGTAGTGTCTCGCTCAAGTCGACTGGAAGAGTTGGTTCTGGACAACGCAGGACTCAAAACGGATTTTGCCCAGAAGCTAGCTGCTGCCTTGGCCCACAACCCCAGCTCAGGACTCACCACCATTAATCTTGCCAACAACCCACTGGAGGACAGAGGTATCTCCTCCCTAGGTGCTCAGTTTGCCAAACTTCATATGGGGCTCAAGCATTTAAACTTCTCCAAAACCTCACTATCACCCAAAGgggTGAACAGCCTTTGTCAGTCATTGAGTGCCAACCCGTCCATCTCCAGCAGCCTGGTCCATCTGGACCTCTCAGGGAATGTCTTCCGAGGAGACGACATGCAGCATTTCTACCACTTCCTGGGTCAACGCAACAGCCTGGCAAACCTTGACCTCTCCAACACCGACTGCTCATTGGACCAGGTTTGCTCAGCTCTGCTGCGAGGCTCGGTCGAATACCTCTCTGTTCTTAACGTGTCGAAGAGCATCTTCCCTCACAGGAAAGGCAAAGAGGTGCCTCCGTCGTTTAAGCACTTCTTCAGCAGTGCCATGTCTCTGAGCTCCATCAACGTGTCAGGGACCAAGCTGCCACCAGAGGCCCTCAAAGCTCTCCTGCTTGGCCTGGCCAGTAATCTCAATCTGAAGGAGGTGTCTCTCGACCTCAGCTGCTGTGAGTTGCGATCAGGAGGTTCTCAGATCCTTGAAGGTTGCATTGCAGAGATCCCAAACATCTCCAGCCTAGACATCTCTGACAACGGCCTGGACTCAGACCTGTCCACCCTGCTGGTGTGGTTGGCCAAGAACCGATCCATCAGACACCTGTCTCTGGGCAAGAACTTCAACAACATCAAGTCCAAAAACCTTGCTCCAGTGTTGGACAGCCTGGTCCACATGATTCAGGAAGAGGAGTCGCCCCTCACCTCTCTGTCTCTAGCAGACTCCAGACTGAAGAGTGATCTGACCATCGTTTTGAACGCTCTCGGCAGCAACTCCTCGCTAACCAGGTTAGACATCAGCGGGAACGCCATGGGGGACATGGGAGCCAAGATGTTGGCCAAGGCGCTACAGATCAACTCTAAACTCAGGACTGTGTTTTGGGATAAGAACAACACCGGCCCTCAGGGTCTTCAGGATGTAGCAGCCGCTCTGGAGAAGAACTTCACCATTCGTTTCATGCCCATCCCCATCATCGATGCCTCCCAGGCTCTGAAGGCCAGCCCTGAGAAGACAGAGGACGCCTTGCTAAAGATTGAGAATTATCTGTACAGGAACCATGAAACCAGAAAATACCTACAGGAACAAGCCTATCGGCTGCAGCAGGGCATCGTGACCACAACCACACAACAGATGATTGACAGGATTTGTGTGAAGGTGCAGGACCACCTGAACTCTCTGAGGAACTCTGAGACGGACGCCATCTTGGAGGACGTCAGGTCAGCAGAGAACCTGATCAAAGATGCCAGGAACTCTAAAACGCTGCTCCCTAACCTCTACCACCTAGGATCAGCTGCCAGAGAGGAGGTGAACAGCTCGTCAGCGGGACCCATCCAGGAGAAACTGGAGTCTATGGCTGGGGAGGTGACTACTGTCATGGACCAACAACTACAGACTCTGTTGGAATCGATGGTGGATGCAGCAGAGTCTCTGTGTCCCCATGTGATGAAGAGGAGTAGTCTTCGTCCAGAGCTAATGAAGGCCAGTTCAGCCAAGATGGTCGTACCCAAAAGCTTCGTCACCAAAACCCTCCTGGAGCAGTCTGGGGTGGATATTATCAACAAGATcagTGAGGTGAAGCTGAGTCTAGCGTCCTTTCTGTCCGATCGCATTGTTGATGAGATTTTGGAGGCTCTTTCCACTTCGCAACACACTCTGGCAGACCATCTGGTGAGGCGAGGTCGCCCCTTGGTGCAGCAGGAGTCGGTGGATCTGGACGTCCCAGAGGAGAAGATTCCTAAACGGGCATCGACCGAGCTCCTTGAGGCTGAGAGGCTGGAGGATTTGGAGACATGCATGATTTTGTGCTGCACcagtGTGACTCCTAAATCCAAGAGGAAGAGCATCCACAGCAGAATGCTTCGGCCGGTGTCTCGTGCCTTTGAGATGGAGTTTGACCTGGACAAGGCCCTGGAAGACGTCCCTGTCCATGTGGAAGACCCTTCATCTCAAACTCCAGCTACTCCATCTCAGGTCCTGCCCAAACTGGAGCACCGAGCGCCAGGAGTGATGGTGGAGCTGCCAtctgaggaggaaaaaaagctgCAACACTTCACCAAACTGCGACCCCGCCGGAACAAGAAAACACATTCCAGCAAAATACCTCAAATCAACAGTACTCCATCTCAGGATGGGGAGCAGAATGGCCTGATGGGAAGGGTGGATGAGGGTGTGGACGAGTTTTTCTCTACAAAGGTCACCAAGATGGATTCCAAACGTTCCAAGAGTTCAGAATCTCAGgatggagagaagaagaagagtaaagGAGGATTCCTTAACCTCATCAAACGTTCTGCCAAATCCGACAAAGCAGATAAATCTGACAAATCAGATAAATCCGAGAAAAACCAGGCAACCCCTCCAGCTTCAGGTCCATCCTCAGCCTCTGTAGGCTCGACGACGGCTTCCATCCCTGAGGAGCCCTCCTCACCAAAGGTGGCAGTAAAGAGCCCAGCGCCTGAGCCAAAGTCCAGAGACGCCTCCAGCCGCTCGCAGCCCACAGACTACAGCAGCAGCTCAGACCGCTCAGAGGAGCTGAGGACGCCAGACTCTATAGACGAGCCCTGGGAGAGTTCAGACGGCCGAGGAAGTCCTCAGGGAGGCAGGCGGTACCCGGGGTTGCAGATGATGGGGGGCAGTGGCCTTCTGGCAGAGATGAAGGCAAAGCAGGAAAGGAGAGCACACAAGTCTTCCAGCCCTGACAAGCCTGACAGCAATGCAACCGCAGCTAAGCCCACCATTCCAGAAAGTAGGTCTCCTAGTGGCTCAATTCATAAATCCGACCCTTCATCTGGTTCTCCAGAGAAGACCCCTCCTCGTGGCGAGACTAAGCCTGACCCAGCCCCTCGTCTAAGGGCTACATCCTCCTCAAGTTCCCCTGGGGGACCCGTGAGTCCCAAACCACCGGTGCCACAGGGAGCGAAGCCTGCTCTGGCCGCCCGACCCACTATCCCACTGAAGCCAAGGACCAGCAGTACCAGCAGGAGCATAGATGAGAGCTCAGATTCCCCCAGCAGTGGCAGTGTGTCCCCTAAGGTCACAGTTCTTCCTCCCACGCTGAAGAGGACGGTgtcagagaaagacaaagagggcCAGACTGGTCTGCAGTCAGGAGGCTCTGCCAACAAAACCACTCAGGATGTGAGGACGGGGTCTGTGCCAGACTCTGTTCAGAGACCCAGCCGTCTCCGCACCAACTCTGAGGACCATGGCTCCTTTAAGACCAAGGGCCAAGCTCCAAACCCTGACAAGGCTGTGCGCAAGAAGTCCTCAgactctgtggaggaggcaGACAAGgactttattttaatttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97304 lncRNA upstream 1589 16730837 ~ 16731044 (+) True G72852
TU97233 lncRNA upstream 238058 16494237 ~ 16494575 (+) True G72801
TU97229 lncRNA upstream 242252 16489593 ~ 16490381 (+) True G72798
TU97228 lncRNA upstream 246714 16485713 ~ 16485919 (+) True G72797
TU97227 lncRNA upstream 250135 16482255 ~ 16482498 (+) True G72796
TU97321 lncRNA downstream 147035 16959788 ~ 16962840 (+) True G72859
TU97344 lncRNA downstream 178963 16991716 ~ 16991989 (+) True G72879
TU97325 lncRNA downstream 252836 17065589 ~ 17065911 (+) True G72862
TU97549 lncRNA downstream 579515 17392268 ~ 17403627 (+) True G73019
TU97564 lncRNA downstream 615075 17427828 ~ 17463027 (+) True G73027
XM_039806894.1 mRNA upstream 3285 16726348 ~ 16729348 (+) True LOC120562939
XM_039806539.1 mRNA upstream 8077 16721636 ~ 16724556 (+) True LOC120562690
XM_039806537.1 mRNA upstream 14109 16632876 ~ 16718524 (+) False LOC120562688
XM_039807231.1 mRNA downstream 3689 16816442 ~ 16831163 (+) True LOC120563118
XM_039805707.1 mRNA downstream 33200 16845953 ~ 16850232 (+) True LOC120562165
XM_039805708.1 mRNA downstream 45270 16858023 ~ 16897965 (+) True sntb1
XM_039804925.1 mRNA downstream 171858 16984611 ~ 16990597 (+) True LOC120561714
XM_039804920.1 mRNA downstream 182556 16995309 ~ 17065077 (+) True LOC120561713
TU97163 other upstream 660432 16018359 ~ 16072201 (+) True G72750
TU97064 other upstream 1176681 15553464 ~ 15555952 (+) False irx4a
unassigned_transcript_349 other upstream 1705980 15026582 ~ 15026653 (+) True trnae-cuc_16
TU96917 other upstream 2102170 14626478 ~ 14630463 (+) False LOC120561718
TU96848 other upstream 2306453 14425794 ~ 14426180 (+) True G72506
unassigned_transcript_351 other downstream 555950 17368703 ~ 17368775 (+) True trnar-acg_16
TU97574 other downstream 636832 17449585 ~ 17452568 (+) True G73031
XR_005639656.1 other downstream 643890 17456643 ~ 17460327 (+) False ubxn11
TU97725 other downstream 832760 17645513 ~ 17647186 (+) True G73123
TU97779 other downstream 938203 17750956 ~ 17779130 (+) False paqr7b

Expression Profile