RNA id: XM_039806003.1


Basic Information

Item Value
RNA id XM_039806003.1
length 3507
RNA type mRNA
GC content 0.45
exon number 15
gene id si:dkey-34d22.1
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18092303 ~ 18105749 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGATTGGCACTCACGGAAAACCAATGAGAGGTCGAGTTTACGTCTCGTGGCCAATAGTAAATATCCAGTACCTTGTAGgcctactatactataacttttcaCTGAGGCTAGAAGCTCGAGCCATCGGGGCTTGCACCTTACTTTTTCACGCGGAGCTCTGGAAATCATGCTTGCAAAGTGTAAAAACATCCGGGATCCTGTGAAGTCTCTTATTACCGGTTTCTGGATCACTTTTATCGTCTGTTCCGTAGGTGTTCACGGCCAGGAGGGTAATGGCTGTGGACATACATTGCTGGGCACAGAGTCTGGCACATTGGCCTCTCAGAACTACCCAGGCACCTACCCCAGTAACACCTGGTGTAAGTGGAGGCTTCGAGTGCCAGAGGGGCGAACGCTGCGACTGCTGTTTGGGGATTTTGACATTGAGAGCAGTGCAGGCTGCAGGAATGGTTCTCTTGTGATCACAGACAAGAGCGGGATACCCAGTCTGGGTCCAGTGTGTGGGAAGCTTGATGCATCCCTGAACAATGTGACATTTAAAAGCAATGAAGTGACAATAACCTTCAGGTCAGGCCCACACCGCTCTGGACGAGGGTTTCTACTGTCCTATACCACAGACCAGTATCCAGATCTCATTTCTTGTTTACAACGAGGATCTCATTCTAGCTCGCAGCTTTTGAGTGTGTACTGCCCTGCTGGGTGTAAGAATATCACAGGGGATGTTTGGGGAAACTCTGAACAGGGTTACAGAGATACCTCAGTCCTGTGCAAGTCTGCAGTCCATGCTGGAGCTGCATCTGATAGTCTGGGAGGCCGTGTCACTGTGAACCGTGGGAGAAGTCTTACACTCTATGAATCCACCTTTGCCAATGGAATCCTTTCAAAAATGGGATCATTATCAGAAAAGAAGCTGCTCTTCAGCCAAGAATGCAACAACATCCTGAGTGTTTCTGGTTTAAATGCCTCATCTTTCCGGGATGAAAACAGTCAAGAGTACACAATGTTCTGGTCCTCCAGAAACATGGATTCTAGCCATGAGTTCCTACCCTGGGCAGCAGACGGTAATGATCCAAATCCGTGGGTGGAGCTGGGGCTGAGTGATAGAAGCAATATCACAGGAATAATAACAACGGTATCAAACGAGTACTACATAGAATCCTACAGTCTTTTTTTCAGCAAGGACAGAAAGGCTTGGAAGCTGTACAAAGGTGCTCTcagcaaagaaaaaaagGTGTTTCAGGCCTATACGGATGGCCACCTCAGGGTTCTCAACAGCTTTTTCCCTCCGGTGGTGGCTCGGTTTGTCCGGCTACAGCCACTCAGCTGGCATGGCCGAGCGTTAGCTCAGGTACAAGTCCTGGGCTGTCCTGTTGCCAAGGTAACACCAAGGTCCCGCTCAGCTGCTGAATCTCCATCCATCAATGTTAACATGGACACACCACGGCCCAGCCCCACTCCTCCTTCCACCACAGAGGGCCCAGTGTTAGTGGATACCAGACAGAGCTCCAGTCAGCCAGTAATAGTGGCAGTGGGAGTGGTCCTGGGGCTGATAACGTGCGGCAGTTGTTTGTTGgctggagtctggtggaagaGAAGGAAAAAAGATTCACAAATGAAGTACTCCTTAACCACAAGTAGTCAGAGTTTCCAGGCAAAGAGTCTCTCCTGCCCACAATCAGAGCTCATCTCTTACCCTCTGGAGCGAAATGTCCATGATGCTCTACCTAGCCCTCCTCTTAATGACTATGCAGAGCCTGCTGTTGCAACTATTGGACCGAAGGTTGGGTCAACATTCAGACCCTCCTCAGATGAGGGCTACACCACCCCCTTCGCCTTCAACCATTATGACACTCCTGGCAACCTGCCGGAGTATGCCGAGCCTCTTCCCCCAGAGCCTGAGTACGCCACGCCATTCAGTGAGCAGCCCTCCGAGTCCAACCTACCGACTTTGACAGGGATCAGTCACAGCAATACACATGGACCCCCTGTACCAGCACCTACCGCTGGTACCAGGACGCCATCCAGCCACGCTGAGTATGACTGTCCCTCGCACAGGATGCTTTCCAATGGCTACTGCACTCCTGCACTACATGTCAATGGCCCCCGGCCGGTCACCGTGGTCTATGCTGAGCCCAAGTCATCGGACTCTTTACTACAGAAGCACACATATGAGGAGCCTTTGTGAACATAGACAAGctcagacacagagaaagaaaaatagaCTCCTGAGCTAAAATGTGTGTTGAACCAGAGGaccacttgtgtgtgtgtgtgtgtgggggggtggtcTCAAGTGGACAAAAAGCTGGACAGTGTTGTCCATACTAGAGAACTAATGCTGACAGAGCTGAACTTCCATTGAGTGATGCACCCAAAGTTGAGAAGTCACTTTGGATCACGGCGCATACATGAGGGTATACACAACTCATTGTGCACAATAATCCGAGAGCCATATGGACACAAATGTTTCCTTCCAGGAAGTATGTAGTTGTACAGCGGAAGTATCCTGTGATGCACAAAGTGAATACAGGTTCAGTCGTGTCTCAGATGAAATGTTTAATCACAAGCTGCACTTTGAGAAAACACATACAGCAATGTATGCTTCATTGTATTTAACAgattaatgcaaaaaaaaaaaaaaattaaaaaaaaagtggattgAATATGTTACTTGTCCTCACAAAACattgtattcacaatgtataatttcaacatgttttgtttaaaaaaacatttaagaagCACTATACAGTAAATGGTACACTGTAACTAAGTGGTCGAGATTGTTGCTATAACTATGTGTAACCACTAGGTGGCTCTCGAGCTTTAAACAGTATTGGATTGTGTGATTATTTGTCTGCTGGTTCTCACTCCTCAGATAATTGTCATACATACatagtaaaagttttttttttattttttaaataaatgcttGGAGTGTAATATAACAGAGAAAGGCACAACAGGCGAAGTGGTGTCGTGATTATGATGGGAGGACTTTCATCTACACTGCTGAAAGCCCCGGTCATTGAACATACCGCGATGCATGTTCTCGAACAAGACACAAAACCTTAACATTAAAACTATTCCATTACGTGGCCTTGTTATTTGTTAGGCTTTAGCTACTGTACAACAACTTAAATCTACTCTGTATTCCATAATTTGACTTAATTGCCAATGCCTTGGAAAGGCCAATGGAAAATACAAGTTAAAATGAAATCACTAAAGAACTTAACATAAATCAACTAATATGACTGCTTTTTTTCCACACGTAGAGGAAAAGAAGATAGAAAATTGTACTTTTTTCCTATTACAAGGCATTTATATAATAAGGGTCAGGTGACAGTGGTAGTTCTCcattatgtcaaaaaatgttACCAAAAGACCCTCGAAAATGTCATTTCATTTCTAGAACTGCTTTCACAAGCTTTGTGGTGTCACATTTAGTGATGAATTCGCTCACTGCTGAATAAGGCACAATAAAACGACTGTATTACCAAACCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97801 lncRNA upstream 165676 17923950 ~ 17926628 (+) True G73186
XR_005639682.1 lncRNA upstream 587383 17500589 ~ 17504921 (+) True LOC120562054
TU97564 lncRNA upstream 629277 17427828 ~ 17463027 (+) True G73027
TU97549 lncRNA upstream 688677 17392268 ~ 17403627 (+) True G73019
TU97325 lncRNA upstream 1026393 17065589 ~ 17065911 (+) True G72862
TU97833 lncRNA downstream 8966 18114715 ~ 18116323 (+) True G73216
TU97857 lncRNA downstream 19245 18124994 ~ 18127318 (+) True G73230
TU97858 lncRNA downstream 19245 18124994 ~ 18126954 (+) False G73230
TU97859 lncRNA downstream 19331 18125080 ~ 18126954 (+) False G73230
TU97860 lncRNA downstream 19331 18125080 ~ 18127318 (+) False G73230
XM_039804754.1 mRNA upstream 337249 17750930 ~ 17755055 (+) True paqr7b
XM_039804753.1 mRNA upstream 345278 17741886 ~ 17747026 (+) True stmn1b
XM_039804751.1 mRNA upstream 350924 17739832 ~ 17741380 (+) True LOC120561605
XM_039804793.1 mRNA upstream 468615 17617748 ~ 17623689 (+) True oprd1b
XM_039807050.1 mRNA upstream 499277 17584041 ~ 17593027 (+) False tcea3
XM_039806700.1 mRNA downstream 65080 18170829 ~ 18172243 (+) True LOC120562800
XM_039806696.1 mRNA downstream 204323 18310072 ~ 18311498 (+) True LOC120562798
XM_039805443.1 mRNA downstream 208920 18314669 ~ 18318666 (+) True has1
XM_039806719.1 mRNA downstream 281596 18387345 ~ 18388459 (+) True LOC120562815
XM_039806718.1 mRNA downstream 289658 18395407 ~ 18397717 (+) True si:dkey-79d12.5
TU97779 other upstream 313174 17750956 ~ 17779130 (+) False paqr7b
TU97725 other upstream 445118 17645513 ~ 17647186 (+) True G73123
XR_005639656.1 other upstream 631977 17456643 ~ 17460327 (+) False ubxn11
TU97574 other upstream 639736 17449585 ~ 17452568 (+) True G73031
unassigned_transcript_351 other upstream 723529 17368703 ~ 17368775 (+) True trnar-acg_16
XR_005639678.1 other downstream 293307 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other downstream 293307 18399056 ~ 18416988 (+) False kcnn4
TU97972 other downstream 309349 18415098 ~ 18420327 (+) False kcnn4
XR_005639844.1 other downstream 526653 18632402 ~ 18637307 (+) True LOC120562796
XR_005639845.1 other downstream 526657 18632406 ~ 18637307 (+) False LOC120562796

Expression Profile