RNA id: XM_039806026.1


Basic Information

Item Value
RNA id XM_039806026.1
length 2179
RNA type mRNA
GC content 0.60
exon number 6
gene id cspg5a
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 32229003 ~ 32293702 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caaccctcttttcttctccccaGATGATGAGAAGGCTGCCGAGCGCGCTGCCCTCCGCCGTGCGTTTGTTTGCCTCTCAGCCACAAAGTGCCCAAAGCACCGATCTGTTCCGAGCCCAGCCAagccgagccgagccgagctgAGCCACGGCGTGCGTCTGCGCCCCACACGCTCCCCCcgcctccaccaccaccactccacCCTCGCCGTCTCCGACCGCCGTTCTGTGGCAATGGAGCCGTAACCAACCTCAGTGTGCTTTAATAACTGAGCCGAGCGTGTGGAACAGCGACGGATCCAGCGGAGACTAAGCGGATATGGAGGAGAAGCGCAGCCAGGCTGGAGTCTAGACTGCACGCAAATCAACACACCCGGATTactttttgcaacattttttttgaaCTCTAATATCACTATTTGAACAGGgatttcctttattttatttgtttctgtccGATAATATTATTCTATCATTGCACGGCGAGGATGCAGGGGAAGGAGGCGAGCTTTTGCACGGGATGCTGGAGACTAGCGCTGCTGTCGTGCGTCCTGGCACTGTACTTGATCCCGCTGGCTGTCCACGgGAATGCTGTTGGGACCAATGCCACTGAGCCGGACAGTGCGGCCAACGTTACCTCCCTGCTCAGCGAGGAGGAGGGGCCCGTTAAGGTCAACGAGGCCGTCCTCGCAGTAACCGGGATGAGTAGCTCGGCCAGTCCAGACACTGTGACCCCGAAGGCGGGCCGGATGCCCCGCACCAGCGAGGAAGACGAGCAGAGCAGCGGCATGTTTGCTGAAACGTTGGTCCCTCCGTTGGAAGAAGTGAGCGTGGCAGCCCCGCCCCAGATCAGCCCTGATTCGGCTGAGACGGAGCACCTGCTGCCTAGCAACCCACGCGGACAGGACGTCGTGGCaagcgaggaggaggaggaaaaggaggaggaggatgaggagcaTCTGCCAAACACCGACCCGCCTTGGATCCACGCCAAGGACACCGCCGTGTTTGACCTGGATCACCTCTTCACCACCACCGCCCAGCCCTCGGCCCCAACCAACCCCACCAATCCCTCCAACCCTGACGTCCTCCACGTGGACTTCTTCGACCCCTCCTCTCGTGGACGCGGCCTCGACCTGGCCCCGCCATCTCCATCATCACTGGCCCATGAGCTGCAGGGAGGCGACCCGACCTCCTGGGCGATGCCGGACAACTACGACTACCTCACCCCCTACGAGGATGGCGTGTCCCCCACTGCTGATGAGTACACCTACAGCACCACGACCGACACCTACGAGAGCGACGAAGACCTCCGCCTCCCTGCTGGGTCTCCAGCTCGCTCCAAGCCCCGAGTGCCAGCGTCTGGCTCCTTCATCCCTGGGGCCGCACGTCCTGGCGTGGGAGCTCCGGTACCAAACGTCCCCGCGGCGGCTCCTCCAGCGGCCTCACCGGTGGACGGGTCAGACGGGATGGGTGGATGCCGTGTGGGCTACCAGATGGTGAACGGAAGTTGCCGCTCGCCCTGCGACATGCAGCCCAACTACTGCTTCAACGGGGGACAGTGTTACCTGCTGGAGGGCATGGGAGTCTTCTGCAGATGTAACGTCCAGGATTACATCTGGCACAAGGGTGCTCGCTGCGACTCGGTGGTGACCGAGTTCCAGGTGATGTGTCTGGCCGTGGGCGCCTCGGCTCTGGTGGTCCTGCTGCTCTTCATGATCGTCGTCTGCTTCGCCAAGAAGCTCCACGTGCTCAAGACGGAGAACAAGAAGCTGCGCAAGCGCAGCAGTAAGTACCGGCCTTCATCGGAGCAGCACAATGATAATTTCTCGCTGTCCACCATCGCTGAGGGCTCCCACCCAAATGTAAGGAAACTGTGCGACACCCCTCCTAACGTCCCTCATGCCCGTGCATTGGCTTACTATGATAACATTATCTGTCAGAAAACCATGAGCAGATACACCTGGGAGTGTAAGACCAAAGAGGAGTCCGACTGTGAGAACAAGCTTGAGGACCCGGTGAAGGCCCCACCCAAGGAGGACGACTCCCTCAACATCCACAACTCTCTGACCCCCAAACACGAGAACCACAAGGTCCTGGGCGAGGAGAACTCCTCGGAGGTAAACTCACTGCAGAACAACATGATGTgagaacaaagcaaaaacaaccCCCTACCCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103929 lncRNA upstream 88860 32138777 ~ 32140143 (+) True G77722
TU103887 lncRNA upstream 238633 31989886 ~ 31990370 (+) True G77687
TU103884 lncRNA upstream 243263 31985466 ~ 31985740 (+) True G77685
TU103883 lncRNA upstream 246287 31982468 ~ 31982716 (+) True G77684
TU103882 lncRNA upstream 246611 31980051 ~ 31982392 (+) True G77683
TU103984 lncRNA downstream 1393 32295095 ~ 32295320 (+) True G77757
TU103992 lncRNA downstream 66843 32360545 ~ 32369078 (+) True G77764
TU103989 lncRNA downstream 80995 32374697 ~ 32376913 (+) True G77762
TU104008 lncRNA downstream 159485 32453187 ~ 32453410 (+) True G77776
TU104096 lncRNA downstream 472569 32766271 ~ 32766508 (+) True G77862
XM_039806158.1 mRNA upstream 16826 32204754 ~ 32212177 (+) True LOC120562445
XM_039805628.1 mRNA upstream 35955 32166319 ~ 32193048 (+) True smarcc1a
XM_039805629.1 mRNA upstream 35955 32166319 ~ 32193048 (+) False smarcc1a
XM_039805801.1 mRNA upstream 79672 32145392 ~ 32149331 (+) True LOC120562212
XM_039806046.1 mRNA upstream 104626 32090158 ~ 32124377 (+) True dpy19l1l
XM_039805907.1 mRNA downstream 15382 32309084 ~ 32314913 (+) True elp6
XM_039805906.1 mRNA downstream 21320 32315022 ~ 32374187 (+) False LOC120562270
XM_039805905.1 mRNA downstream 24505 32318207 ~ 32374187 (+) True LOC120562270
XM_039804931.1 mRNA downstream 111431 32405133 ~ 32421472 (+) False LOC120561717
XM_039804930.1 mRNA downstream 111431 32405133 ~ 32420184 (+) False LOC120561717
TU103881 other upstream 249094 31976318 ~ 31979909 (+) True G77682
TU103600 other upstream 1092857 31134829 ~ 31136146 (+) True G77447
TU103301 other upstream 2104365 30123702 ~ 30124638 (+) True G77239
TU103032 other upstream 2816590 29404008 ~ 29412413 (+) False G77028
TU103024 other upstream 2839111 29384135 ~ 29389892 (+) True LOC120562177
XR_005639638.1 other downstream 111431 32405133 ~ 32421472 (+) True LOC120561717
XR_005639639.1 other downstream 111431 32405133 ~ 32421472 (+) False LOC120561717
TU104140 other downstream 806711 33100413 ~ 33101534 (+) True G77888
unassigned_transcript_355 other downstream 1332229 33625931 ~ 33626002 (+) True trnap-agg_3
unassigned_transcript_356 other downstream 1337337 33631039 ~ 33631110 (+) True trnap-agg_4

Expression Profile