RNA id: XM_039806044.1


Basic Information

Item Value
RNA id XM_039806044.1
length 1194
RNA type mRNA
GC content 0.44
exon number 7
gene id tfpt
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 22893099 ~ 22898869 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATAGGTGTATCGACGAGAATGAGAAGGACGGGCGGCTGCTCTTGCTTCGCTTTACGTTTGATTTAAGCAAAACATGCTCTTAGCTGAACTGACGGTGTAGATCATAGACTAACACACAGTCAGTGAGTAAATACTGACCGTTTGAGACAGTCAGTTTGTAGTTGAGTTTTAAACCCGCAGGACACTGCTGCTGACACCAGTGTTTTTGGACTTATCTTGCAGAAATATGATGGAGGATTTCTCTGGTTTGGCTCTGCCTCCTCTGTTTGGAGGACACATCCTGGAGGCAGAGCTGGAGCCTGGAGGTGTGGAGCTGGGACCGGGAGAGGTGGAGTTGGGCCCGGGAAGCAATGAGCTGCTGGAGAGTACAGcacaggaggatgaagagagaaGAGCTCTTGATAAgaggaaatatctggctctgaACAGGAGATGTAAAGACATTGAACAGGTGAATCAGAAGATTCTTGGTCGCCTTCATCAAGTACAAAGAATTACACGGCGCTTGAAGAAGGAGAGACGGTTTCTCATGAAGACTTTAGATGCTCATGGAGATGACTACAGAAACGCCCAGCTCACTATACTTCTAGAGGATGAGTCTGGAGCCCAATTAGATCCTGCTGATGGAGTGGAGGATTACCGGCTCAATGGTGTGTCTTGTTCCACTTTGTCTCCAGCATTGCATCATGCTGCCGGACCAAAGCGGAGGAGGCACCGAATTCCACGGCAAGAAAGCGATAAAGACCAacagACTGAACCAGACATGTCAGTGTTGGCAGAGACACAGTTTGGAGAAATGCCCAGCCCAACCTCTCTGTCTCACTGATAATTGCACTGCAGCCCtagatatgatgatgatgatgatgatgatgatgatgaagaagcACCCAGATTCTCTAAGTTTTCAGTAGATACGCTGCCTCTGTTCAGCCagggttttggactgtttgtAGTTTTACTTGAACATTGTGAACAGATTGAATTAATGTAAGGTAAAATAAGATGTTTTTCACCTGGGTATTAGGGGTGCATGATTCAGAAAATATCACAATCCgatattgatttttaggctcaagattcgattcaaatcGATTTTCCATTCAAACACGATTctcgattaaaaaaacaattcacagtatgtaaatgtagttacttttcccatgtgattgcagtagacatacaattaaaaaaaaa

Function

GO: NA

KEGG:

id description
K11670 TEPT, INO80F; TCF3 fusion partner

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100087 lncRNA upstream 73046 22814044 ~ 22820053 (+) False myh14
TU100074 lncRNA upstream 187796 22704872 ~ 22705303 (+) False LOC120562539
TU100051 lncRNA upstream 267146 22623215 ~ 22625953 (+) True arnt
TU99986 lncRNA upstream 580584 22264939 ~ 22312515 (+) False rusc1
TU99992 lncRNA upstream 637621 22255271 ~ 22255478 (+) True G74769
TU100374 lncRNA downstream 19883 22918752 ~ 22920103 (+) True G75042
TU100379 lncRNA downstream 25723 22924592 ~ 22925155 (+) True G75045
TU100406 lncRNA downstream 84023 22982892 ~ 22987322 (+) True G75065
TU100410 lncRNA downstream 95551 22994420 ~ 22994706 (+) True G75069
TU100419 lncRNA downstream 117938 23016807 ~ 23018595 (+) True G75077
XM_039806043.1 mRNA upstream 5221 22878031 ~ 22887878 (+) True zgc:158689
XM_039806496.1 mRNA upstream 28256 22852358 ~ 22864843 (+) True cyth2
XM_039805856.1 mRNA upstream 43572 22838405 ~ 22849527 (+) True sphk2
XM_039807061.1 mRNA upstream 55300 22832356 ~ 22837799 (+) True rpl18
XM_039806580.1 mRNA upstream 62744 22827807 ~ 22830355 (+) True si:ch211-120k19.1
XM_039804760.1 mRNA downstream 1220 22900089 ~ 22911520 (+) True cnot3a
XM_039807055.1 mRNA downstream 69569 22968438 ~ 22982779 (+) True rbfox1l
XM_039807056.1 mRNA downstream 73776 22972645 ~ 22982779 (+) False rbfox1l
XM_039806443.1 mRNA downstream 105503 23004372 ~ 23007320 (+) True cdc42ep5
XM_039805889.1 mRNA downstream 129849 23028718 ~ 23036069 (+) True leng9
TU100082 other upstream 73046 22814044 ~ 22820053 (+) False myh14
TU100065 other upstream 225555 22660479 ~ 22667544 (+) False LOC120562537
TU100045 other upstream 270015 22616972 ~ 22623084 (+) False arnt
TU100052 other upstream 270015 22616972 ~ 22623084 (+) False arnt
XR_005639804.1 other upstream 307527 22559945 ~ 22585572 (+) True celf3b
TU100365 other downstream 1275 22900144 ~ 22902048 (+) False cnot3a
TU100710 other downstream 592256 23491125 ~ 23494023 (+) True LOC120562612
XR_005639923.1 other downstream 865446 23764315 ~ 23764645 (+) True LOC120563205
XR_005639924.1 other downstream 868316 23767185 ~ 23767467 (+) True LOC120563206
XR_005639922.1 other downstream 869364 23768233 ~ 23768577 (+) False LOC120563204

Expression Profile