RNA id: XM_039806065.1


Basic Information

Item Value
RNA id XM_039806065.1
length 1647
RNA type mRNA
GC content 0.41
exon number 6
gene id si:ch211-225p5.8
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 28766995 ~ 28773597 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTCTAAATATAGCGGACTTTAAGTCAGACTGGATTGCAGGGGAGACTTAAAACTACTGCGAAGAACGCACGGAGACTCAAgttttttagtaaatattttctgtgttcTAAAGCTCTCAGTCATTTTTCACTTTGATGAAATGCGAGGTTGTTGCACTAATGGACTGACACTCTGGATCAAATGGTGAACTGGTTTGTTATGAAGACTATGGAATTATTCAGGGATCAAGAGGCATTATCTCAATAATGTAATCTTAATCACCACAGATATTTCTCTGCGGGTTTACGTCAAAGGAAAGTTCAATATTTTGTTCAACAGTTGGCCATAAGTTGCTCCAGCAGAAATGATATGCCACTTGTCTCTTTTAGTCGTCGTCAATCTTTTCGTGTCTCAGTGCCACGGCGGCTGTGCGGAGGTGGACTCCCTGACTGAAGCCGTGGCAGGAGAAGGATTCCTGCTGGGCTGCATCTCCtgtaagagaagagaggaggtgtCTGCCCGAGCCACTGTAGACTGGCACTTCAAACCGCTGGGAGAGGAGGAGTTCAGGCATACTTTCCACTATGACCACCCCAGTGCTAGCATCCTCAATGAAGATTTCAGCAAGCGTCTGGCCTGGCATGGATCAAACAACAGCGATATTCAGATAGGATCCATTTACATTAATAACGTCACCTTCAATGACACAGGGACGTACCGCTGCACAATCTTCCGCACCCTCTCCCTGCCCAAGTATGACGAGCACGTCACCGTGGAGAAAGAGTTCGAGCTCAATGTGGTGGCTGTAGCCAATCGGGAGCTGACAGCAGTGATCTCAGAGATTGTAATGTACGTGCTGATCGTGGTTCTGCAGCTGTGGCTCATTGTGGTTCTGGTCTACTGTTACAAGAAGATTTCGGAGGAGCATGAAGGTCGGGAGGCCCGTAAAGCTCTCAAGGCTCAGGCAAAGCTGTTAGAAACAAAAGACAACTGTGACGGGGTGCAGCTAGAGTAACATTACCGGTAAAAAGATCTCTGTAAGAGTCGAGCTTCATGACTGTACCGTGGTTTTGCTAACTACTGTTGATTTTGAATTTTGAATGCCTTGGTCAATCAGTCATACACGCAACCTGTATGATCAACTGTAAAGATAAGCTGATGGTGCAGATGGCAGATTTCCCTCCttgttattaaaatatttacacTTCATAGTTTGgggatttgtgaaaaaaagaccTTTAAAGGTTTTTTGAAAAGAAATACCTTCAATGTATGGAATTGAATGACTTTTTAGTATTtaataatcataaaaaatatttatttcataatttatttttagtCTATACAACATTTAATTACCAGAGCCAAACATCAAACGGCTATCCCAATGGCTATTGattcattttctattgataAACTGATCAAATGATTGACTTATACTGTTGATGGgaattttttaaagttttaaaacaaataGCTTCAGGCAAACTGCGTCTTACTGGGCTGAAGTGTGTACAGTGTAGATATGCTGGGTGTAATGCAACCCATGgcctttgtagcaactcatgtCTATAGCATCTCTTTTAACCATACAACAGAAGctgaaattgcaaaaaaaaaaatcatgtttttaccataatttaaacaaatacAATGAAGTAATTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102689 lncRNA upstream 34568 28672027 ~ 28732427 (+) True G76774
TU102681 lncRNA upstream 62363 28690615 ~ 28704632 (+) True G76767
TU102697 lncRNA upstream 73880 28692141 ~ 28693115 (+) True G76780
TU102630 lncRNA upstream 168855 28590114 ~ 28598140 (+) True G76726
TU102620 lncRNA upstream 189348 28575516 ~ 28577647 (+) True G76718
TU102728 lncRNA downstream 62799 28836396 ~ 28842270 (+) True LOC120562350
XR_005639754.1 lncRNA downstream 63944 28837541 ~ 28841494 (+) False LOC120562350
TU102819 lncRNA downstream 107376 28880973 ~ 28881188 (+) True G76859
TU102852 lncRNA downstream 165612 28939209 ~ 28940355 (+) True G76887
TU102850 lncRNA downstream 167465 28941062 ~ 28942726 (+) True G76885
XM_039806064.1 mRNA upstream 38721 28710637 ~ 28728274 (+) True scn1ba
XM_039806063.1 mRNA upstream 38721 28710637 ~ 28728274 (+) False scn1ba
XM_039804942.1 mRNA upstream 61669 28699900 ~ 28705326 (+) True LOC120561727
XM_039806993.1 mRNA upstream 109853 28650293 ~ 28657142 (+) True zmp:0000000881
XM_039806280.1 mRNA upstream 284396 28472676 ~ 28482599 (+) True LOC120562546
XM_039806066.1 mRNA downstream 2034 28775631 ~ 28776059 (+) True LOC120562348
XM_039806058.1 mRNA downstream 5547 28779144 ~ 28799696 (+) True LOC120562344
XM_039806060.1 mRNA downstream 5547 28779144 ~ 28799696 (+) False LOC120562344
XM_039806059.1 mRNA downstream 6470 28780067 ~ 28799696 (+) False LOC120562344
XM_039806049.1 mRNA downstream 27053 28800650 ~ 28835368 (+) False LOC120562342
TU102613 other upstream 197129 28553572 ~ 28569866 (+) True G76714
TU102606 other upstream 245373 28520699 ~ 28521622 (+) True G76707
TU102473 other upstream 479951 28283276 ~ 28287044 (+) False lim2.5
TU102453 other upstream 521834 28241783 ~ 28245161 (+) True G76581
TU102349 other upstream 814415 27948883 ~ 27952580 (+) True G76511
XR_005639746.1 other downstream 27054 28800651 ~ 28834170 (+) False LOC120562342
unassigned_transcript_353 other downstream 72798 28846395 ~ 28846466 (+) True trnag-ucc_8
unassigned_transcript_354 other downstream 73115 28846712 ~ 28846783 (+) True trnaa-ugc_7
TU103005 other downstream 555192 29328789 ~ 29330258 (+) True G77009
TU103024 other downstream 610538 29384135 ~ 29389892 (+) True LOC120562177

Expression Profile