RNA id: XM_039806076.1


Basic Information

Item Value
RNA id XM_039806076.1
length 2129
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC120562361
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40083030 ~ 40093260 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCTCAGGAGAGTCTTCTTCGTCAGCTGATCCAGGATCTGAGGTTTCTCTGACTCTCACCAACAAGTTTGACATCTTCAACGAGTCTGAGGACAGACCAGATGCCAGAGGACTGGTGAGcACCAAGCAGCTGATCATCGATGTCCGTCAGGTGACTCTCTGACAGACATGCTGAGAACCTCTGTGTCACATgaccagGAAGTGTGTCATGATTGGCTGATACAGCGGCGAGCTCGGCAGGACGCCCGCACGCCTGACAAGATGAAGACGAACGAGTCGCTGGTCGCCAACGGCAACCTGAGtttggaggagaagaagaggaagatccTGAGATGTCTTCGTCGTCTGGAGGGACTCGGAGTCCTGAGAGCCCCCAACCCAGAGGACCAGATCCTGCAGACGATCGCCAagGACATCCGTCAGCAGCGTGTGCACCGCCAGCGGAGAGGGGTGGAGCTTCAGAAACTCCGTCAGACTCTCAGCAGCCTGCAGGACAAGAGCAGCTTCCACAGCCAGCAGGTGGACTACTACAGACATtacatcacttcctgtctggACCACTTGACTCACAGcagTAAATCGACCAATAAGAAGAAGCTTCCTGCTCTGAGCAACGCCGCCGCCAGGCTGCAGGAGAAAGGAGTTCTGGTGGAGATCCAGGACCTGCCAGCTacacaGTTTAAGAACGTGGTCTTTGACATCGTCCCTGGACCGGAGAAAGGAACATTCAACGTCAAAGCTCGATTCCTCGGCATCGAGATGGAAGAGTTCCCGCTCAAATACCAGGATCTATTGCAGCTGCAGTACGAAGGTGTGGCCGTGATGAAGATGTTCGACAAAGCCAAAATCAACGTCAACCTGCTCATCTTCCTCCTCAACAAGAAGTTCTTCAAGAAATGAAGTCCTGCTCTTCTTCTACTCTCCTATCTCTGGTTTTATATCTACAACAGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTTTATATCTACAACAGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTTAATATCTACAACGGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTTTATATCTACAACGGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTTTATATCTACAACAGAGTGACCCATCCTCTCTACACTCCTATCTCTGGTTTTATATCTACAACAGAGTGACCCCTCCTCTCTACACTCCTATCTCTGGTTTTATATCTACAACAGAGTGACCCATCCTCTCTACGCTCCTATCTCTGGTTTAATATCTACAACAGAGTGACCCATCCTCTCTACGCTCCTATCTCTGGTTTTATATCTACAACGGAGTGACCCATCCTCTCTACTCTCCTATCTCTGGTTTAATATCTACAACAGAGTGACCCATCCTCTCTACTCTCCTATCTCTGGTTTTGTATGCTactacatcatgttttaatatatCTCATAACTAACTAACCAATCAGCTAAGCTTTATCAACATGTTATTGCTGCATTATTGCACATTTTAATAAGGGAACCAAATAGTTAAATAATCATGAGACAGGGTTAGTGTTGGGCATCTTCTCTACACTCCTATCTCTGCTGTTATGTCACTACGttatcttttatatatattatatatctatcTCTATATACGTCACTGtacttgtgtttgtctctcacTCTCAACGTGTAGTTCTGcttcctgtctgtgttttaATCTCACTAGAGTTTAAACAGAGTGAAGCATCTTCTCTACACTCCTATCTCTGTTTTTATACGTATATTCtatgtttcctgtttttatttcctgCTAATcagacagagtgagacatcccTCTGGCTCCTATCTCTGCTCaggtttattattaataaacagACACCAGCTGATAATTTAAGAGATATCATGTACCTTCAACACTAGTCTTATTTTGGAGGGTGTAGTTTCTTCGAGGCCATAAATCAGGAACCAGAATCTGAGTTATGATATGATCTTtgagtttaaatacattttagaaaagaagCTGCTCTGATCTATAACTGTACATATTTTCTGTcactttctgttttctctcttttacttttctttttgaagcatgttaataataataaattgaatttctGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107113 lncRNA upstream 45869 40015559 ~ 40037161 (+) True G79944
TU107076 lncRNA upstream 164476 39861074 ~ 39918554 (+) True G79922
XR_005639755.1 lncRNA upstream 213069 39865784 ~ 39869961 (+) True LOC120562365
TU107102 lncRNA upstream 215269 39865777 ~ 39867761 (+) False LOC120562365
TU107072 lncRNA upstream 221482 39861074 ~ 39861548 (+) False G79922
TU107142 lncRNA downstream 26910 40120170 ~ 40120511 (+) True G79960
TU107168 lncRNA downstream 129113 40222373 ~ 40255520 (+) True G79982
TU107174 lncRNA downstream 129322 40222582 ~ 40377864 (+) True G79985
TU107195 lncRNA downstream 186426 40279686 ~ 40280012 (+) True G79998
TU107199 lncRNA downstream 222172 40315432 ~ 40316591 (+) True G80002
XM_039806205.1 mRNA upstream 103665 39924325 ~ 39979365 (+) True LOC120562496
XM_039806074.1 mRNA upstream 254326 39811855 ~ 39828704 (+) True LOC120562359
XM_039806203.1 mRNA upstream 279143 39781236 ~ 39803887 (+) True LOC120562494
XM_039806080.1 mRNA upstream 311610 39765173 ~ 39771420 (+) True LOC120562364
XM_039807013.1 mRNA upstream 655910 39425328 ~ 39427120 (+) False LOC120563008
XM_039806206.1 mRNA downstream 18173 40111433 ~ 40113823 (+) True si:dkey-15h8.17
XM_039806078.1 mRNA downstream 46473 40139733 ~ 40152085 (+) True LOC120562363
XM_039806086.1 mRNA downstream 175688 40268948 ~ 40289601 (+) True LOC120562376
XM_039806087.1 mRNA downstream 184936 40278196 ~ 40281752 (+) True LOC120562377
XM_039806207.1 mRNA downstream 197722 40290982 ~ 40344206 (+) True LOC120562498
TU107036 other upstream 314180 39767927 ~ 39768850 (+) False LOC120562364
TU106769 other upstream 619189 39460448 ~ 39463841 (+) True G79722
TU106757 other upstream 628738 39433461 ~ 39454292 (+) True G79713
TU106759 other upstream 628738 39433461 ~ 39454292 (+) False G79713
TU106586 other upstream 761705 39313989 ~ 39321325 (+) False LOC120563015
TU107204 other downstream 223479 40316739 ~ 40321067 (+) True G80003
TU107169 other downstream 241102 40334362 ~ 40345060 (+) False LOC120562498
TU107236 other downstream 323818 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other downstream 326609 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other downstream 326719 40419979 ~ 40420429 (+) False LOC120562499

Expression Profile