RNA id: XM_039806090.1


Basic Information

Item Value
RNA id XM_039806090.1
length 1149
RNA type mRNA
GC content 0.57
exon number 9
gene id LOC120562382
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40451288 ~ 40477146 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCGGAAGAGGGCGTAGTCCGCAGTAGGGAGTTGGCTGGATGAGGAAGCAGCGGATCAGACTTCAGCGCCGCAAACAGGACCAGAACCGGGACAAAAAGTGACCATAAACCGAGACCAGAACCCGAAGTGTGTTCCCCAGAGACTCCGACCAGAACCGCACCTGCCTGCCCCAGAGACCCTTCAAAGATCGACACCAGGCCGCTGTTTGTAGAACTTTCCTCCGCTCCCTTAGCTAACGGCTAGTTCTAGTGCTAACGGCTAATTAGCCTGTGTGCTAACAGGGAAGTGACGCTGCGCGCTGAAGTCGGGACTCTTTTCTTCAGAAGACTGACACAGATAGAGAAGAAGATGAGTGGAGGACTGAACAGCATCGATGCCGTGAAGAAGAAGATCAAAGTTCTGCAGGAGCAGGCTGAGGAGGCAGAGGACCGAGCAGCCAGACTGCAGAAGGAGgtggagaaggagaagaggagcagggaggagGCGGAGGGGGAGGTGACAGCTCTGGGTCGGCGTCTGCAGCTCAGCGAGGATAATCTGGAGCGAGTCCAGGAGAGACTGACCACCACGCTGCACAAACTGGACGAGGTGGAGAAGTCTGCCGACGAGAGCGAGAGAGGGATGAAGGTGATAGAGAACCGAGCTCTGAAAGACGAGGACCGGATGGAGCAGCAGGAGATTCAGCTCAGAGAAGCCAAACTGATCGCAGAGGAGGCTGACCGCAAATACGAAGAGgtggcTCGTAAACTGATGATGGTGGAAGCAGAACTGGAACGAGCTGAAGACCGGGCCGAGCAGGGAGAGAgTAAGAGCCGGCAGTTGGAGGAGGAGCTGAAAACAGTCTTCACTGGTTCAAAGTCTCTGCAGGCGCAGACGGAGAAGtaCTCTCTGAAGGAGGACCGGTACGAAGAGGAGATCAAGAACCTGAGCCGCAAACTCAAGGAGGCTGAGAGCAGAGCCGAGGCTGCGGAGCGTTCAGTGGCCAAACTGGAGAAAACCATCGACGGCCTGGAAGATGCTTTGACTTCAGCCAGAAACGCCAACATGGAGCTGCAGGCGACGCTGAATCAGACCATGGAGGAGCTCAACTCCTGTTAGaccccccccacctcctcccccacctcctccccctcctctcccccacTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107241 lncRNA upstream 6571 40444385 ~ 40444717 (+) True G80019
TU107239 lncRNA upstream 9977 40434293 ~ 40441311 (+) False LOC120562499
TU107240 lncRNA upstream 9977 40434293 ~ 40441311 (+) False LOC120562499
TU107215 lncRNA upstream 51400 40356168 ~ 40399888 (+) True G80008
TU107211 lncRNA upstream 103987 40346457 ~ 40347301 (+) False LOC120562379
TU107243 lncRNA downstream 4665 40481811 ~ 40485057 (+) True G80021
TU107246 lncRNA downstream 15828 40492974 ~ 40494187 (+) True G80024
TU107548 lncRNA downstream 135020 40612166 ~ 40612567 (+) True G80200
TU107578 lncRNA downstream 279651 40756797 ~ 40758554 (+) True G80222
TU107581 lncRNA downstream 284265 40761411 ~ 40762310 (+) True G80223
XM_039806208.1 mRNA upstream 9972 40378682 ~ 40441316 (+) True LOC120562499
XM_039806207.1 mRNA upstream 107082 40290982 ~ 40344206 (+) True LOC120562498
XM_039806086.1 mRNA upstream 161687 40268948 ~ 40289601 (+) True LOC120562376
XM_039806087.1 mRNA upstream 169536 40278196 ~ 40281752 (+) True LOC120562377
XM_039806078.1 mRNA upstream 299203 40139733 ~ 40152085 (+) True LOC120562363
XM_039806097.1 mRNA downstream 10457 40487603 ~ 40507973 (+) True decr1
XM_039806099.1 mRNA downstream 32904 40510050 ~ 40549415 (+) True LOC120562386
XM_039806100.1 mRNA downstream 168513 40645659 ~ 40653781 (+) False LOC120562387
XM_039806209.1 mRNA downstream 178366 40655512 ~ 40660314 (+) True LOC120562500
XM_039806132.1 mRNA downstream 353366 40830512 ~ 40837078 (+) True LOC120562405
TU107236 other upstream 30859 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other upstream 30859 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other upstream 30859 40419979 ~ 40420429 (+) False LOC120562499
TU107169 other upstream 106228 40334362 ~ 40345060 (+) False LOC120562498
TU107204 other upstream 130221 40316739 ~ 40321067 (+) True G80003
XR_005639770.1 other downstream 168513 40645659 ~ 40656567 (+) True LOC120562387
XR_005639771.1 other downstream 530821 41007967 ~ 41012619 (+) True LOC120562400
TU107703 other downstream 679328 41156474 ~ 41163694 (+) False polr3glb
TU107708 other downstream 679328 41156474 ~ 41182667 (+) False polr3glb
TU107699 other downstream 699583 41176729 ~ 41182667 (+) False polr3glb

Expression Profile