RNA id: XM_039806092.1


Basic Information

Item Value
RNA id XM_039806092.1
length 852
RNA type mRNA
GC content 0.54
exon number 6
gene id pmvk
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40480066 ~ 40487346 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTGGTCCGACAGTCAGGAAGCAGCCACGCTTCATATTATACTACatgcacatactatatactagATACTATATACTAGATACTAGATATACATCAGTCAGGAGCTCCGCAGCCAACCGAAGGGGACCAGAGGACTGATGCAGGGTCTGGGTTCTGGGTTTAAGGACCAGAGGACTGAGGACCAGAGGACTGATGGAGGGTCTGGGTTCTGGTTTAGGGACCAGAGGACTGATGGAGGATCCAGAACCTGAACCCAAACTGGTTCTGGTCTTCAGCGGGAAACGGAAGTCCGGGAAGGATTACGTGACGGACCTGATTCACAGCCGtTTGGGACCAGATGTTTGCTGCGTCCTGCGTCTGTCTGGACCTCTGAAACAGCAGTATGCTCAGGAGCATGGTCTGGACCTGGACCAGCTGCTGGGACCTGGTCTCTATAAGGAGCAGTTTCGGGCCGATATGATTCTTTGGGGAGAAACTCGCCGACGCCACGACCCCGGATTCTTCTGTCGCCTAGCAACCAGAGGAGCACGGCAACCTGTCTGGgtgGTCAGCGATGCTCGCCGGCTGTCTGACCTGCGATGGTTCTTCTCCGAGTTTCCTCGACAGACTCGAAGTGTTCAAGTTCAAAGTTCAGAAACCACTCGGACACAGAGGGGGTGGAGCTTCACCGCAGgtgtGGATGATGCAGAGTCTGAGTGCGGCCTGGACAGCGGCGTGGAGTTTGATTGGATCATCACCAACGAGGCCGACGCCCCTTCACTAGAAGAGCAGCTGCAGCCAATCCTGAAGCTCGCCGAAGAAGCAGCAGCATCATCGCTGTGATAACTCACCTTCACACAGGaagcagcatc

Function

GO:

id name namespace
GO:0006695 cholesterol biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004631 phosphomevalonate kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107468 lncRNA downstream 8819 40451313 ~ 40471247 (-) False G80178
TU107469 lncRNA downstream 9820 40451313 ~ 40470246 (-) False G80178
TU107471 lncRNA downstream 11346 40456636 ~ 40468720 (-) False G80178
TU107470 lncRNA downstream 14033 40451313 ~ 40466033 (-) True G80178
TU107467 lncRNA downstream 23099 40451313 ~ 40456967 (-) False G80178
TU107521 lncRNA upstream 3117 40490457 ~ 40492193 (-) True G80185
TU107523 lncRNA upstream 6035 40493375 ~ 40495921 (-) False G80186
TU107526 lncRNA upstream 6035 40493375 ~ 40495679 (-) False G80186
TU107527 lncRNA upstream 6035 40493375 ~ 40495679 (-) False G80186
TU107532 lncRNA upstream 6035 40493375 ~ 40496093 (-) False G80186
XM_039806088.1 mRNA downstream 115882 40354634 ~ 40364184 (-) True tmem79b
XM_039806084.1 mRNA downstream 227912 40245385 ~ 40252154 (-) True LOC120562375
XM_039806085.1 mRNA downstream 228079 40245385 ~ 40251987 (-) False LOC120562375
XM_039806081.1 mRNA downstream 245403 40224168 ~ 40234663 (-) False LOC120562372
XM_039806082.1 mRNA downstream 278935 40180343 ~ 40201131 (-) False LOC120562374
XM_039806124.1 mRNA upstream 323895 40811235 ~ 40816555 (-) True LOC120562399
XM_039806125.1 mRNA upstream 323895 40811235 ~ 40815578 (-) False LOC120562399
XM_039806130.1 mRNA upstream 396781 40884121 ~ 40888754 (-) True LOC120562403
XM_039806212.1 mRNA upstream 912470 41399810 ~ 41409787 (-) True LOC120562505
XM_039806213.1 mRNA upstream 927134 41414474 ~ 41421025 (-) True LOC120562506
TU107393 other downstream 172543 40222367 ~ 40307523 (-) True G80129
XR_005639763.1 other downstream 245403 40205104 ~ 40234663 (-) False LOC120562372
TU107529 other upstream 4983 40492323 ~ 40497596 (-) True G80186
TU107582 other upstream 191003 40678343 ~ 40681458 (-) False LOC120562415
TU107584 other upstream 191003 40678343 ~ 40744812 (-) False LOC120562415
TU107585 other upstream 191003 40678343 ~ 40765467 (-) True LOC120562415
TU108007 other upstream 528510 41015850 ~ 41017192 (-) True G80488

Expression Profile