RNA id: XM_039806097.1



Basic Information


Item Value
RNA id XM_039806097.1
length 1314
RNA type mRNA
GC content 0.56
exon number 10
gene id decr1
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40487603 ~ 40507973 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ccccacccctctctctccagtTGGTATAATCCGGTCAGAGGTCGTCAGCTGTTAGACAAGATGGCGGCCGCCGTGTTCGGGAGGAGAGAACTTCTGAGATCAGTGAAGACTTCAGTAAACAGGTCCTGGTTCCACAGCGCGGGGGCAGTTCTGCAGCAGTCCGGTTCTGCCCCCCCCCAGGCGGGCTTCTTCCCGCCGGCGGAAGGTGCCATGCTGCCGACAGGAAGCTTCAACAACAGAGTGGCGTTCATCACTGGCGGCGGGACGGGACTGGGCCGAGCCATGACCACCACGCTGTCCCAGCTGGGGGCGCAGTGTGTCATCGCcagcagGAAGATGGACGTCTTGCAGCAAACAGCCGAGGAGATCAGCAGCCAGACGGGAAACAAGGTCCATGCAGTCCAGTGTGATGTCAAAGATCCCGCGGCTGTTTCTCGTTGTGTGGACCAGATGGAAGCTCTGACGGGACTTCCTGATGTGATCATCAACAACGCGGCGGGAAACTTTGTATGTCCGTCAGAACGTTTGTCTCCAAACGGCTGGAAGAGCATCACGGACATCGTCCTGAACGGGACGGCCTTCATCACCCTGGAGCTGGGCAAGAGACTGATCCACAAACAGAAAGGTGCGTCCTTCCTGGCCATCACCACCATCTACGCCGAGTCTGGTTCTGGTTTCGTGGTGCCGAGTGCGTCGGCGAAGGCTGGAGTCGAGGCGCTCTACAAGTCTCTGGCTGCAGAGTGGGGGCGTTACGGACACAGGTTCAACATCATCCAGCCTGGACCAATCAGAACCAAGggAGCGTTCAGCCGTCTGGACCCGACCGGAGCCTTTGAGAAAGCGATGATCGATCGGATCCCGACCGGCCGACTCGGAACACCGGCGGAGATCGCTAACCTGGCGGCGTACATGAGCAGCGACTACGCTACCTGGATGTCTGGAGCCGTGATCCGGTTCGATGGAGGAGAATACGTGTCGATGGCCGGAGAGTTTAACGAGCTGCGCAGGGTGACTCCAGATCAGTGGAAGATGATGGAGGCGATGATCAGGAGCACCAAAGGATCCTAAAAACACAACGACCAATCAGATCACCGCGTCCACCTGTTGATGTCATGATGATAGAACGACTGATCTGTGAACTGGAAACACTAATACCCTAAAGCCAGTTAGCATGTTAGCCAGTTAGCATGTTAGCCAGTTAGCTtgttagcctgttagcatgttagcctgTTAGCCAGTTAGCATGTAGCTGCTCAGTGTAAACACAGAAAGATGTTTCTGAAGTttgataataaaacaaatgtaacCCAGAAA

Function


GO: NA

KEGG:

id description
K13236 DECR1; 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing], mitochondrial

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU107243 lncRNA upstream 2546 40481811 ~ 40485057 (+) True G80021
TU107231 lncRNA upstream 31501 40454447 ~ 40456102 (+) True G80015
TU107241 lncRNA upstream 42886 40444385 ~ 40444717 (+) True G80019
TU107239 lncRNA upstream 46292 40434293 ~ 40441311 (+) False LOC120562499
TU107240 lncRNA upstream 46292 40434293 ~ 40441311 (+) False LOC120562499
TU107548 lncRNA downstream 104193 40612166 ~ 40612567 (+) True G80200
TU107578 lncRNA downstream 248824 40756797 ~ 40758554 (+) True G80222
TU107581 lncRNA downstream 253438 40761411 ~ 40762310 (+) True G80223
XR_005639778.1 lncRNA downstream 266828 40774801 ~ 40775942 (+) True LOC120562411
TU107599 lncRNA downstream 267062 40775035 ~ 40775934 (+) False G80230
XM_039806091.1 mRNA upstream 10457 40451288 ~ 40477146 (+) True LOC120562382
XM_039806089.1 mRNA upstream 10457 40451288 ~ 40477146 (+) False LOC120562382
XM_039806090.1 mRNA upstream 10457 40451288 ~ 40477146 (+) False LOC120562382
XM_039806208.1 mRNA upstream 46287 40378682 ~ 40441316 (+) True LOC120562499
XM_039806207.1 mRNA upstream 143397 40290982 ~ 40344206 (+) True LOC120562498
XM_039806099.1 mRNA downstream 2077 40510050 ~ 40549415 (+) True LOC120562386
XM_039806100.1 mRNA downstream 137686 40645659 ~ 40653781 (+) False LOC120562387
XM_039806209.1 mRNA downstream 147539 40655512 ~ 40660314 (+) True LOC120562500
XM_039806132.1 mRNA downstream 322539 40830512 ~ 40837078 (+) True LOC120562405
XM_039806129.1 mRNA downstream 399355 40907328 ~ 40907836 (+) True LOC120562402
TU107236 other upstream 67174 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other upstream 67174 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other upstream 67174 40419979 ~ 40420429 (+) False LOC120562499
TU107169 other upstream 142543 40334362 ~ 40345060 (+) False LOC120562498
TU107204 other upstream 166536 40316739 ~ 40321067 (+) True G80003
XR_005639770.1 other downstream 137686 40645659 ~ 40656567 (+) True LOC120562387
XR_005639771.1 other downstream 499994 41007967 ~ 41012619 (+) True LOC120562400
TU107703 other downstream 648501 41156474 ~ 41163694 (+) False polr3glb
TU107708 other downstream 648501 41156474 ~ 41182667 (+) False polr3glb
TU107699 other downstream 668756 41176729 ~ 41182667 (+) False polr3glb

Expression Profile