RNA id: XR_005639770.1


Basic Information

Item Value
RNA id XR_005639770.1
length 1928
RNA type transcript
GC content 0.44
exon number 10
gene id LOC120562387
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40645659 ~ 40656567 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTCACGCTGCCTTGTGAATATGTGATCATTCAGGACAAATGTAGTAGCACTACTTGGCTTTGGAGTCATAAAGGGGAAGCAGCAGTAGAGCTGGTTGGTCATGGACAGATTAAAGATGGATTCCCAGAGCTAAATCAGACAGACTGAGTGTTACAGAGAAATGTTCTCTGGTTATGAAGAATGTCACAGAGGAGGATGTTGGTCGTTACACCTGCAGACAGTTCAACAAATCAGGAGGACCACAACAAGGTCCAGATGCTGTGGTTCATCTGTCTGTTGTCAACATGGAAGAACAGAAGAACACTGATGATACAGTCACCTTGATCTGCTCTGTGTTGACATATGCTGGGTGTGATCACACAGTGAAGTGGCTCTATGAGGGGAATGAGAATGTCGTGGAGATACCATCTCATACCTGTTCAGCCAGTGTGTCATTTCCTCCTCATCTTAATCAGAAGTTACTGAAGTGTAACGTGACAGATAAGAAGAATGGAAACACGCTGCTGTGTAATGTCGGCCCCCAGTCCTCTTGTAAGAAAACAGgaaaCACAACAGTGGGAACAGATAACACACCAACACCAGATCGGTTGGTGTACATGGGTGTTGCTGTGGGAGTAACAGCACTCTTAGCAGCAATCATCATTGTGGTAGTCATCAGACGGAAGAAAACTAAAAGTAACAAAACACAGACGAATGAAAATATTGGACTGAGTTTGAACCCTGCAGAGAATCAGTCTGCTCCAGAAACCAGTCAGGACATGGCTGATCCTGAAGGTGGTGTTTTCTACGCCTCTGTCAGCCACACCAAGAAGAGCAGCAGTAGAGCTCAGGCTCGGGgtaaagatgatgatgatgatgatgatgatgatgcagtgACCTACAGCACTGTGaaagctcctcctcctccttctgctgctgctgcatcctCTGCTGATGTCAGCGACCTCTACGCCACCATCAACAAACCAAACCAATAAGACAGCACGGTGTACTTACAGCTCATAGCATTACAGaatgctgtgtggactagccagaccctcctctgctctgcagtgtgtggaggatggtctggtAAAGTGAGACTACTGGCTCAGTAACACTGAGTTACTGGGTGCCCTTTTCTAAATCATCCCGCGGAAAAGACTTTCTGTTCGAGGTTTAATTTATAGATCTCCTTACCCTCAGGACCTAAATGGATCATGACTGGGACAGTTATTTAAAGAGGGATCAGTCATGTCATGAAGGATCTTGTGCATATTATTGCGCTTTTATTGTGTCATCGTTTATTACTGTTTTCTGCTGCTGTATGAATTTGCTTATCAGGTTTTTTGAGagattacataaataaataaaaaaaatgtcagtattTTGAGTTTTTAATTCTTGATTAATCTGTTTTAGTCTCTTATTACCAATCCCCCTCTACTGTTTCTTCACCGTGATAACTTTCTCCTACAAGAACAAACACATCACAGACAACGTCTCCAAAATGATTGGCCTCCCCACCCCTAACCTCTCAGACCTCAACAGAATGTCATGATTGTGGGTTctgttatgttctgtttcctgttttattttgacatctgTCTTGtctcccttgtcttgtctagtttacTTCCTGTCCTTGGTTTTCCCTCCCGTGTgattgccctaatgtgtttcacctgtttgcccagccttgtgtcacctgtcccttatTGGTCCTCGTTACCTGgtttatttagtctctgtgttgtctttgtctggTGTCGGATCATTTCGTTCTGTTTGCCCTGTTTCCTGCTGGATGTTcttctctgttctgttgtggATTCTGTTTTGCATTGGTTCCTGCCTGGCTACCTTCCGGAGGACACTTTGTTCAGAAACGTTGACAGTCGTGAGCgagagaacaagagagagagacggagaggcaCGATGGCTGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107548 lncRNA upstream 33092 40612166 ~ 40612567 (+) True G80200
TU107246 lncRNA upstream 151472 40492974 ~ 40494187 (+) True G80024
TU107243 lncRNA upstream 160602 40481811 ~ 40485057 (+) True G80021
TU107231 lncRNA upstream 189557 40454447 ~ 40456102 (+) True G80015
TU107241 lncRNA upstream 200942 40444385 ~ 40444717 (+) True G80019
TU107578 lncRNA downstream 100230 40756797 ~ 40758554 (+) True G80222
TU107581 lncRNA downstream 104844 40761411 ~ 40762310 (+) True G80223
XR_005639778.1 lncRNA downstream 118234 40774801 ~ 40775942 (+) True LOC120562411
TU107599 lncRNA downstream 118468 40775035 ~ 40775934 (+) False G80230
TU107594 lncRNA downstream 123175 40779742 ~ 40782050 (+) True G80230
XM_039806099.1 mRNA upstream 96244 40510050 ~ 40549415 (+) True LOC120562386
XM_039806097.1 mRNA upstream 137686 40487603 ~ 40507973 (+) True decr1
XM_039806091.1 mRNA upstream 168513 40451288 ~ 40477146 (+) True LOC120562382
XM_039806089.1 mRNA upstream 168513 40451288 ~ 40477146 (+) False LOC120562382
XM_039806090.1 mRNA upstream 168513 40451288 ~ 40477146 (+) False LOC120562382
XM_039806132.1 mRNA downstream 173945 40830512 ~ 40837078 (+) True LOC120562405
XM_039806129.1 mRNA downstream 250761 40907328 ~ 40907836 (+) True LOC120562402
XM_039806126.1 mRNA downstream 353787 41010354 ~ 41012619 (+) False LOC120562400
XM_039806128.1 mRNA downstream 445481 41102048 ~ 41103783 (+) True LOC120562401
XM_039806123.1 mRNA downstream 491297 41147864 ~ 41150002 (+) True LOC120562397
TU107236 other upstream 225230 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other upstream 225230 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other upstream 225230 40419979 ~ 40420429 (+) False LOC120562499
TU107169 other upstream 300599 40334362 ~ 40345060 (+) False LOC120562498
TU107204 other upstream 324592 40316739 ~ 40321067 (+) True G80003
XR_005639771.1 other downstream 351400 41007967 ~ 41012619 (+) True LOC120562400
TU107703 other downstream 499907 41156474 ~ 41163694 (+) False polr3glb
TU107708 other downstream 499907 41156474 ~ 41182667 (+) False polr3glb
TU107699 other downstream 520162 41176729 ~ 41182667 (+) False polr3glb
TU107756 other downstream 699913 41356480 ~ 41360206 (+) True G80320

Expression Profile