RNA id: XM_039806102.1


Basic Information

Item Value
RNA id XM_039806102.1
length 4041
RNA type mRNA
GC content 0.46
exon number 19
gene id LOC120562388
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41220084 ~ 41294381 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCACTTCACAAGAAGAGCCGGGAGGTGTAGTGTGTTACAACACGCAGCACGTGCACTAAACTGGGAACGGTCCTGACGATTATCAACAGCCCCTAGTGCAGATCAACTAACGCTACCCTTCTTACTGATGATGACTCCATCTGTGGTCTTTGTCTTGCTGGCTGTTCTAGAACAGACCAGTGCCACATTTGATTCTAATATTGCTAGAGGTGGAAAGGTGATTCAGTCCTCCCTGTATGAGAATGCCGTCCCTGAAAGGGCCATTGATGGAAATCGTGCTAGCAACTGGGTACAGCGATCCTGTGCCCACACTAAGTATGATTTAAAACCATGGTGGAGACTGGACCTCCTGAAGACATATCAGATCGACACTGTCACCATCACCAACAGAGGAGATTGTTGCCCCGAGAGAATCAATGGTGCTGAGATCCGCATTGGAAATTCCCTCAATGACAATGGCAACGGTAACCCCAGatGTGCTGTTATCTCGTCTATGGCAGCTGGGACCTCCCAAACCTTTGTGTGTAATGGAATGGAAGGTCGTTATGTCAATATTGTGATTCCTGGAAGACAAGAATACCTGACACTGTGCGAGGTGGAAGTCACTGGTCAGGCTTTAGATACTAATGTTGCTAGAGGTGGAAACGTGATTCAGTCCTCCCTGTATGGGAATGAAGTCCCTGAAAGGGCCATTGATGGAAATCGTGCTAGCAACCTGGCACAGGAATCCTGTACCCACACTAAGAAAGATTTAAAACCATGGTGGAGACTGGACCTCCTGAAGACATATCAGATCAACACTGTCACCATCACCAACAGAGGAGATTGTTGCGCCGGGAGAATCAATGGTGCTGAGATCCGCATAGGAAATTCCCTCAGTGACAATGGCAATGATAACCCCAGatGTGCTGTCATTTCGTCTATCAAAGCTGGGACCTCCCAAACCTTTGTGTGTAATGGAATGGAAGGTCGTTATCTCAACATTGTGATTCCTGGAAGACGAGAATACCTGACACTGTGTGAGGTGGAAGTCACTGGTCAGGCTTTAGATACTAATATTGCTAGACGTGGAAACGTGATTCAGTCCTCCCTGTATGAGGATGCCATCCCTGAAAGGGCCATTGATGGAAATCGTGCTAGCAACTGGGTACAGAGATCCTGTGCCCACACTAAGTATGATTTAAAACCATGGTGGAGACTGGACCTCCTGAAGACATATCAGATCAACACTGTCACCATCACCAACAGAGGAGATTGTTGCCACGAGAGAATCAATGGTGCTGAGATCCACATTGGAAATTCCCTCAATGACAATGGCAACGGTAACCCCAGATGTGCTGTTATCTCGTCTATGGCAGCTGGGACCTCCCAAACCTTTGTGTGTAATGGAATGGAAGGTCGTTATGTCAACATTGTGATTCCTGGAAGACGAGAATACCTGACACTGTGCGAGGTGGAAGTCACTGGTCAGCCTTCAGGAATCACTGCTCCAACTGATATTAATATTGCTAGAGGTGGAAACGTGACTCAGTCCTCCCTGTATGAGAAAGAGGTCCCTGAAAGGGCCATAGATGGGAATTGTGCTAGCAACTTGAGAGAGGGATCCTGTACCCACACTAAATATGATTTAAAACCATGGTGGAGACTGGACCTCCTGAAGACATATCAGATCAACACTGTCACCATCACCAACAGAGGAGATTGTTGCCACGAGAGAATCAATGGTGCTGAGATCCGCATTGGAAATTCCCTTAATGACAATGGCAACGATAACCCCAGatgtGCTGTTATCTCGTCTATGGCAGCTGGGTCTTCCCAAACCTTTGTGTGTAATGGAATGGAAGGTCGTTATGTCAACATTGTGATTCCTGGAAGACAAGAATACCTGACACTCTGTGAGGTGGAAGTCACTGGTCAGCCTTCAGGAATCACTGCTCCAATTGATCCTAATATTGCTAGAGGTGGAAACGTGACTCAGTCCTCCCTGTATGAGAAAGAGGTCCCTGAAAGGGCCATAGATGGGAATCGTGCTAGCAACTTGAGAGAGGGATCCTGTACCCACACTGACTATGATTTAAAACCATGGTGGAGACTGGACCTCCTGAAGACATATCAGATCAACAATGTCACCATCACCAACAGAGGAGATTGTTGCGCCTGGAGAATTAATGGTGCTGAGATCCGCATTGGAAATTCCCTCAATGACAATGGCAACGATAACCCCAGATGTGCTGTTATCTCGTCTATGGCAGCTGGGACCTCCCAAACCTTTGTGTGTAATGGAATGGAAGGTCGTTATGTCAACATTGTGATCCCTGGAAGACAAGAATACCTGACACTGTGTGAGGTGGAAGTCACTGGTCAGCCTTCAGGAATCACTGCTCCAACTGATCCTAATATTGCTAGAGGTGGAAACGTGACTCAGTCCTCCCTGTATGAGAAAGAGGTCCCTGAAAGGGCCATAGATGGGAATCGTGCTAGCAACTTGAGAGAGGGATCCTGTACCCACACTGACTATGATTTAAAACCATGGTGGAGACTGGACCTCCTGAAGACATATCAGATCAACAATGTCACCATCACCAACAGAGGAGATTGTTGCGCCTGGAGAATTAATGGTGCTGAGATCCGCATTGGAAATTCCCTCAATGACAATGGCAACGATAACCCCAGATGTGCTGTTATCTCGTCTATGGCAGCTGGGACCTCCCAAACCTTTGTGTGTAATGGAATGGAAGGTCGTTATGTCAACATTGTGATCCCTGGAAGACAAGAATACCTGACACTGTGTGAGGTGGAAGTCACTGGTCAGCCTTCAGGAATCACTGCTCCAACTGATCCTAATATTGCTAGAGGTGGAAATGTGACTCAGTCCTCCCTGTATGAGAAAGAGGTCCCTGAAAGGGCCATAGATGGGAATCGTGCTAGCAACTTGAGAGAGGGATCCTGTACCCACACTAAATATGATTTCAAACCATGGTGGAGACTGGACCTCCTGAAGACATATCAGATCAACACTGTCACCATCACCAACAGAGGAGATTGTTGTGCCTGGAGAATCAATGGTGCTGAGATCCGCATTGGAAATTCCCTCAATGACAATGGCAACGGTAACCCCAGATGTGCTGTTATCTCGTCTATGGCAGCTGGGACCTCCCAAACCTTTGTGTGTAATGGAATGGAAGGTCGTTATGTCAACATTCTGATTCCTGGAAGACGAGAATACCTGACACTGTGCGAGGTGGAAGTCACTGGTCAGCCTTCAGGAATCACTGCTCCAACTGATATTAATATTGCTAGAGGTGGAAACGTGACTCAGTCCTCCCTGTATGAGAAAGAGGTCCCTGAAAGGGCCATAGATGGGAATCGTGCTAGCAACTTGAGAGAGAGATCCTGTACCCACACTAAATATGATTTAAAACCATGGTGGAGACTGGACCTCCTGAAGACATATCAGATCAACACTGTCACCATCACCAACAGAGGAGATTGTTGTGCCTGGAGAATTAATGGTGCTGAGATCCGCATTGGAAACTCCCTCAATGACAATGGCAACGGTAACCCCAGatGTGCTGTTATCTCGTCTATGGCAGCTGGGACCTCCCAAACCTTTGAGTGTAATGGAATGGAAGGTCGTTTTGTCAACATTCTGATTCCAGGAAGACGAGAATACCTGACACTGTGTGAGGTGGAAGTCACTGGGACAGTATCATAGGCAACTGattctaaaataatttcttcATGTTCACTTAATTTTAACGCTAGTCTATGCAAGTTTGCGTATTTGGTGTGGTTTTGCTTCGCACACAGAGCATATTTTAAGTAAAACACTTGGTATTACATATCATAAGGTCAGGGCAATCGTATGCTGAAGCTTTTTGTAAAACTAATACAGATGGTTgttttatacattatttaacataaaaaaaagaaatgatattAAGTGCTCTGTCTGCATTGTATTTGTTGTAATTTTTCTTGGGCTTGTTTCtatctactgtacttaaataaaattgaaaaataaacacttttaAAGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639779.1 lncRNA upstream 83910 41135950 ~ 41136174 (+) True LOC120562412
TU107662 lncRNA upstream 112358 41068184 ~ 41107726 (+) True G80265
XR_005639774.1 lncRNA upstream 128170 41091477 ~ 41091914 (+) True LOC120562408
TU107680 lncRNA upstream 174692 41044777 ~ 41045392 (+) True G80280
XR_005639784.1 lncRNA upstream 238457 40979110 ~ 40981627 (+) True LOC120562417
TU107739 lncRNA downstream 19330 41313711 ~ 41347897 (+) True G80306
TU107752 lncRNA downstream 54201 41348582 ~ 41402166 (+) False G80318
TU107758 lncRNA downstream 66078 41360459 ~ 41362553 (+) True G80321
TU107761 lncRNA downstream 68298 41362679 ~ 41363468 (+) True G80322
TU107764 lncRNA downstream 69157 41363538 ~ 41364714 (+) True G80323
XM_039806134.1 mRNA upstream 33139 41176536 ~ 41186945 (+) True polr3glb
XM_039806109.1 mRNA upstream 45238 41163743 ~ 41174846 (+) True LOC120562391
XM_039806110.1 mRNA upstream 45238 41163743 ~ 41174846 (+) False LOC120562391
XM_039806111.1 mRNA upstream 45238 41163743 ~ 41174846 (+) False LOC120562391
XM_039806123.1 mRNA upstream 70082 41147864 ~ 41150002 (+) True LOC120562397
XM_039806104.1 mRNA downstream 83066 41377447 ~ 41387329 (+) True LOC120562389
XM_039806131.1 mRNA downstream 205804 41500185 ~ 41501659 (+) True LOC120562404
XM_039806120.1 mRNA downstream 246709 41541090 ~ 41545594 (+) False LOC120562396
XM_039806122.1 mRNA downstream 247549 41541930 ~ 41545594 (+) True LOC120562396
XM_039806117.1 mRNA downstream 247549 41541930 ~ 41545594 (+) False LOC120562396
TU107708 other upstream 37417 41156474 ~ 41182667 (+) False polr3glb
TU107699 other upstream 37417 41176729 ~ 41182667 (+) False polr3glb
TU107703 other upstream 56390 41156474 ~ 41163694 (+) False polr3glb
XR_005639771.1 other upstream 207465 41007967 ~ 41012619 (+) True LOC120562400
XR_005639770.1 other upstream 563517 40645659 ~ 40656567 (+) True LOC120562387
TU107756 other downstream 62099 41356480 ~ 41360206 (+) True G80320
TU107784 other downstream 126975 41421356 ~ 41422578 (+) True G80337
TU107787 other downstream 126975 41421356 ~ 41422578 (+) False G80337
TU107913 other downstream 645117 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 708992 42003373 ~ 42006594 (+) True G80410

Expression Profile