RNA id: XM_039806106.1


Basic Information

Item Value
RNA id XM_039806106.1
length 2803
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC120562390
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41239083 ~ 41319704 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTGTTCGCACTTCacaaagagctgagaggtgtaGTGTGTTACAACACGCAGCACATGCACTCAACTGGGAACGAGATGATGACTCCATCTGTGGTCTTTGTCTTGCTGGCTGTTCTAGGACAGACCAGCGCCACATTTGATACTAATATTGCTAGAGGAGGAAAGGTGATTCAGTCCTCCCTGTATGGGAATGCCGTCCCTGAAAGGGCCATTGATGGAAATCGTGCTAGCAACCTGGGACAGGGATCCTGTAGCGTCACACGAACAGATTTCAAACCATGGTGGAGACTGGACCTCGTGAAGACATATCAGATCAACACCGTCACCATCACCAACAGAAGAGATTGTTGCGCCGGGAGAATCAATGGTGCTGAGATCCGCATTGGAAATTCCCTCAATGACAATGGCAACGGTAACCCCAGatGTGCTGTTATCTCGTCTATCAAAGCTGGGACCTCCCAAACCTTTGTGTGTAATGGAATGGAAGGTCGTTATCTCAACATTGTGATTCCTGGAAGACGAGAATACCTGACACTGTGTGAGGTGGAAGTCACTGGTCAGGCTTTAGATCCTAATATTGCTAGACGTGGAAACGCCATTCAGTCCTCCCTGTATGAGAATGAAGTCCCTGAAAGGGCCATTGATGGGAATCGTGCTAGCAACTTGAGAGAGGGATCCTGTACCCACACTAAGAAAGATTTAAAACCATGGTGGAGACTGGACCTCCTGAAGACATATCAGATCAACACTGTCACCATCACCAACAGAGGAGATTGTTGCGCTGCGAGAATCAATGGTGCTGAGATCCGCATTGGAGATTCCCTCAATGACAATGGCAATGATAACCCCAGatgtgCTGTTATCTCGTCTATGGCAGCTGGGACCTCCCAAACCTTTGTGTGTAATGGAATGGAAGGTCGTTATGTCAACATTGTGATTCCTGGAAGACAAGAATTCCTGACACTGTGTGAGGTGGAAGTCACTGGTCAGGCTTTAGATCCTAATATTGCTAGACGTGGAAACGTGATTCAGTCCTCCCTGTATGGGAATGAAGTCCCTGAAAGGGCCATTGATGGGAATCGTGCTAGCAACCTGGGACAGAGATCCTGTAGCGTCACTATGAAAGACTTAAAACCATGGTGGAGACTGGACCTCCTGAAGACATATCAGATCAACACTGTCACCATCACCAACAGAGGAGATTGTTGCGCCGGGAGAATCAATGGTGCTGAGATCCGCATAGGAAATTCCCTCAATGACAATGGCAACGGTAACCCCAGatgTGCTGTAATCTCATCTATCAAAGGTGGGACCTCCCAAACCTTTGTGTGTAATGAAATGGAAGGTCGTTATATCAACATTGTGATTCCTGGAAGACGAGAATACCTGACACTGTGTGAGGTGGAAGTCACTGGTCAGGCTACAGGAATCACTGCTCCAACTGATATTAATATTGCTAGAGGTGGAAAAGTGATTCAGTCCTCCCTGTATGGGAATGAAGTCCCTGAAAGGGCCATTGATGGGAATCGTGCCAGCCACCTAGGACAGAAATCCTGTAGTGTCACTAAGACGGATTTCAAACCATGGTGGAGACTGGACCTCCTGAAGACATATCAGATCAACACTGTCACTATCACCAACAGAGGAGATTGTTGCGCCGGCAGAATCAATGGTGCTGAGATCCGCATTGGAAATTCCCTCAATGACAATGGCAACGGTAACCCCAGatGTGCTGTTATCTCGTCTATCAAAGCTGGGACCTCCCAAACCTTTGAGTGTAATGGAATGGAAGGTCGTTATATCAACATTGTGATTCCTGGAAGACATGAATACCTGACACTGTGTGAGGTGGAAGTCACTGGTCAGGCTTTAGATACTAATATTGCTAGAGGTGGAAACGTGATTCAGTCCTCCCTGTACGAGAATGAGTTCCCTGAAAGGGCCATTGATGGAAATCGTGCTAGCAACCTGGGACAGAGATCCTGTAGCGTCACTAACAATGATTTTAAACCATGGTGGAGACTGGACCTCCTGAAGACATATCAGATCAACACTGTCACCATCACCAACAGAGGAGATTGTTGCCACGAGAGAATCAATGGTGCTGAGATCCGCATTGGAGATTCCCTCAACAACAATGGCAACAATAACCCCAGATGTGCTGTTATCTCGTCTATGGCAGCTGGGACCTCCCAAACCTTTGTGTGTAATGGAATGAAAGGTCGTTTTGTCAACATTGTGATTCCAGGAAGACGAGAATACCTGACACTGTGCGAAGTGGAAGTCACTGGGACAGCATCATAGGAAACTGATTCTAACCCTAAACTGATTCTAACCCTAATTTCTTAGTTTATGTTCACTTATTCTAACGCTAGTCTATGCAAGTTTGCGTATTTACTGTGCTTTTGCTTCGCACACAGAGCATATTTTAAGTAAAACACTTTATGTGGTATTACATATCATAAGGTCAGGACATCATACAATCGTATGCTGGAGCTTTATGTAAAACTGATTCAGATGGTTGTTTTATACATTAGCTAACATAAAATAAAGGCTATGGttcaaatttaaatagcgaacaAAAGAGATACAGCTCTAGTAACTGATTATACCTACTATTCTGTACCATGAAAGCAGCGAGAGATGCATTATTAAACAGAACTGTGGGAAAATGAAAGCAATGGGTGAGAAATGATATACAGTGCACTGGCTGCATTGTATTTGTTGTAATTTTTCTTGGGCTTGTTTCtatctactgtacttaaatgtaCTTGCAAAATAAACATTACTTTTAAAGCTAa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639779.1 lncRNA upstream 102909 41135950 ~ 41136174 (+) True LOC120562412
TU107662 lncRNA upstream 131357 41068184 ~ 41107726 (+) True G80265
XR_005639774.1 lncRNA upstream 147169 41091477 ~ 41091914 (+) True LOC120562408
TU107680 lncRNA upstream 193691 41044777 ~ 41045392 (+) True G80280
XR_005639784.1 lncRNA upstream 257456 40979110 ~ 40981627 (+) True LOC120562417
TU107752 lncRNA downstream 28878 41348582 ~ 41402166 (+) False G80318
TU107758 lncRNA downstream 40755 41360459 ~ 41362553 (+) True G80321
TU107761 lncRNA downstream 42975 41362679 ~ 41363468 (+) True G80322
TU107764 lncRNA downstream 43834 41363538 ~ 41364714 (+) True G80323
TU107774 lncRNA downstream 57761 41377465 ~ 41381254 (+) False LOC120562389
XM_039806134.1 mRNA upstream 52138 41176536 ~ 41186945 (+) True polr3glb
XM_039806109.1 mRNA upstream 64237 41163743 ~ 41174846 (+) True LOC120562391
XM_039806110.1 mRNA upstream 64237 41163743 ~ 41174846 (+) False LOC120562391
XM_039806111.1 mRNA upstream 64237 41163743 ~ 41174846 (+) False LOC120562391
XM_039806123.1 mRNA upstream 89081 41147864 ~ 41150002 (+) True LOC120562397
XM_039806104.1 mRNA downstream 57743 41377447 ~ 41387329 (+) True LOC120562389
XM_039806131.1 mRNA downstream 180481 41500185 ~ 41501659 (+) True LOC120562404
XM_039806120.1 mRNA downstream 221386 41541090 ~ 41545594 (+) False LOC120562396
XM_039806122.1 mRNA downstream 222226 41541930 ~ 41545594 (+) True LOC120562396
XM_039806117.1 mRNA downstream 222226 41541930 ~ 41545594 (+) False LOC120562396
TU107708 other upstream 56416 41156474 ~ 41182667 (+) False polr3glb
TU107699 other upstream 56416 41176729 ~ 41182667 (+) False polr3glb
TU107703 other upstream 75389 41156474 ~ 41163694 (+) False polr3glb
XR_005639771.1 other upstream 226464 41007967 ~ 41012619 (+) True LOC120562400
XR_005639770.1 other upstream 582516 40645659 ~ 40656567 (+) True LOC120562387
TU107756 other downstream 36776 41356480 ~ 41360206 (+) True G80320
TU107784 other downstream 101652 41421356 ~ 41422578 (+) True G80337
TU107787 other downstream 101652 41421356 ~ 41422578 (+) False G80337
TU107913 other downstream 619794 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 683669 42003373 ~ 42006594 (+) True G80410

Expression Profile