RNA id: XM_039806109.1


Basic Information

Item Value
RNA id XM_039806109.1
length 4374
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC120562391
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41163743 ~ 41174846 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggagccTCTCCAGGGCAGCTCAATGATTACTTCTCAAGGGCCGGACCCAACCTCTGACCCTGCAGACTCAGCCTCAGCTCTGACAGAGTCAACAGTCAAGTCAGATGCTGCCCTCCCCCCCCAGGCCAGCAGGAAGTACCTGGTGTATGAGAGCTGTCTGATGGAGCTGTTTGAGCGCTGTGCTCGGTGCCAGCGGGCCTGTGCTGTAACAACCACGAGGCTCGGGACCTTGGTGTCAGTGGAGCAGCTGTGCAGCCACTGTGAGTCCTCCCGGAGGTGGAGGAGCCAGCCTCTCGTGGACCAGACCCCAGCTGGGGACGTCCAGCTGTCTGCTGCAGTCTACCTCAGCGGAGCCTCCTTCTCCACACTTCACAAGGTGTTCAAGGCCATGCGTCTGCAGATGTTTCCGTATGACACGTTCTGTCGGTATGCCAGGATGTTTGTGGAGCCGGCTGTAGTCCACAGCTGGAGGAAGTCCCAGGAGGTGATGCTGCAGCAGCTCAGCCAACAGGACAAAGTCCCACTGGGGGGGGACATGAGGGCCCACTCAGTCCCACTGGGGGGGGACATGAGGGCCCACTCTCCAGGCCACTGTCCAAAATATGTCAGCTACACCACGATGGAGCTCAGCACCAACACTGTAGTCGATGTCCAGCTGGTTCAGAGCGCTGAGGTTGGGAGCCCACACATGGAGAAGGAGGGCCTGAAGAGGAGCCTGGCCTTGTTGGCTGCACGAGGCGTAACCATCGATTACATCGTCACCGACCGCCACACGCTAATTCAGGAGTTCCTGAGGGAGGAAAACATCCCCCAGTTCTACGATGTCTGGCACATGGAGAAAAGTATAGTTCCTTTTGTTACAAGACTTTCAAAGAAAATAgataaaatgaccaaaaagaagggctgtgagaaagtgaagaGGTGGATTCCAGCCATCAGGAACCACGTGTACTGGACCGCTGCGTCGTCCCAGACGGGCCCGGAGAGACTGGCTAAATGGACCTCCCTCCTCAACCACGTACGGGACGTTCACACACACCAGGACCCCCTCTTCCCACAATGCCTCCATACAGTCGGAAACACAAGGGACAAGAGGAAATGGCTCTCAGCAGGAAGTCGTGCGTTCGACAGGCTGGAGAAGGAGCTGACCAGAAAGTCAGTCCTGAAGGACATCGCCCAGCTCAGCCCCCACTACCAGGCGTCCTCTTGGGAGGCCTTCCAGAGCACCGTCCTGCAGTTCGCTCCTAAAGACCTGGTCTCTCCATACCTGGGAACGCTGTGCAGACTCTACCTGGCTGCTCTGCATTATAACGAGAATGCTGACGGAGGACGAGCCCCAACATCGTCAGGGGATCCTCTTCTCAAACGGAGATCTCCAAAATCCAGGACGGGAGAGAGCCGAGCCAGACCGCTGAAGACAGAGGCAACATTCAggtATGTAGATGATTTGATGGACCTGATCATGGAGAAAGTCTTTGTCGACCCATCATCATATAGAGATGAGATTCTGAAGCTAAACATCCCGCCAGACCGGTCTTCCCAATGAGCCTCCATATGTTCCCAATGAGCCTCCATATCTTCCCAATGAGCCTCCATATGTTCCCAATGAGCCTCCATATGTTCCCAATGAGCCTCCATATGTTCCCAATGAGCCTCCATATGTTCCCAATGAGCCTCCATATCTTCCCAATGAGCCTCCATATCTTCCCAATGAGCCTCCATATCTTCCCAATGAGCCTCCATATCTTCCCAATGAGCCTCCATATCTTCCCAATGAGCCTCCATATCTTCCCAATGAGCCTCCATATCTTCCCAATGAGCCTCCATATTTTCCCAATGAGCCTCCATATCTTCCCAATGAGCCTCCATATCTTCCCAATGAGCCTCCATATCTTCCCAATGAGCCTCCATATCTTCCCAATGAGCCTCCATATCTTCCCAATGAGCCTCCATATCTTCCCAATGAGCCTCCATATCTTCCCAATGAGCCTCCATATATTCCCTGGGCGTCAGGAAACTCCCATTGGATCCAAAGTACCACACCTGAGAGGACCCCTTCCTGTATCTTCTGACCAAGGAAGCCCCAGCACCAGCTCCCCGAGCTTCTATAAGCTCCAAACCTGTAACCACGGAGACACATCAACAACCAGTTCTCTAATGTCTGGTTCTAGGGTtggtaccgagacccggtgccttaatgaccggtatctaccggaccgaatagcaacgcagatttcggtgcctctgATATgtctgcgcttctctctgatgctccgaaacggatGTTAGCGGCGACAGACACTTTGCTGCACGTGGCGCTAGTTACACCACActcgttagcctagcgttagctagcagctggattaaacacgctTACAATGCTggcagctaaacggtgtaaaccaggggggtcaaactcagtttcccagagggccagacatgtgtatatatagatTATTGACATCCAGCGACAAATATGTTcagaaaagtgccaaaaaagtgtcaaaattgtctgaaaaagtgacaaacacattgtgaaaagtgtcaaaaacttcCAAAAATGTGGGAAAACATTGAGTAAAGCATCCAAAACCttaaaacaaagtgcctaaaGCATTGATAAAAGCACATAAACCTCCGTAAAAGGTGTCAAAAATAtcgaaaaaagcaccaaaaatgtaaaaagaattatttctttattgtgaatctaaattgaaatgcgggccggatcaaaacctgCGAGGGGGCGGATGTGGCCCCCGGGCCTTATGTTTGACACCGtgtggtgtaaagtgtgactgtatatCACTGGAGAGGATCCAACAGTCGGAAAAACAGCAGCCGGTGCGTTGAGACTGGTGAACTACGTCATTGTTATACGTTATAGTGATTACATTatgattaaatcatttaattttgaccatatggcctcaGCAATAAGCCGACTGTTGTTAGGGACCCGAACGCTAGCCAGCCCTACTGGGTCACAGCTCTCTGATTTGGATTCAGTGAATCCTTCATCACTGTATTTATGTACAATGACAACGCTCAATAAATGTTTGTTAtatctgtaaaatgtttcaTGTGATGAATGTGTAATATACAGGATTTGCTTAGGAACTACTTGGCTATATGTTCAAGAACTAATCTGATGTGAAATAGTGGCACTGACTGTATTTAGTATATGATGTAGTACTAAGAGGGAATGTAAGTCGGTTAAATCAGCTGAAGGTCCCGTGGTCAGCCCTGGAACTGACAACAGGCTTCTCCGTTAGTCACATGCTGAACAAACATTTGATGTGCTGCACAGAAATTAGTTTTTCACTAAAAAGGGCAACGGCAATGTGCACTTTTTGTCATGCTATTTATTTCAGGAATATTAAATGTCACCTCATCACTTCTCACTTCTTAAACCAAGGTTTCTTGTACAGCCGTGTAGATGTGGCAGCTTGGTGCCCATCCAGAGCCATCCCATGGATGGAGCAGTTTGAGAAAGTCTCTAGTTGACAACATTGTAACATGGGCATTTGTGCAGTTCCAAGTGTTGATATTTGGATGAGCTCAGCAATAAGGTTAAATATGAACTGTCCTTGTATTGATGTTTCCAGGGAAGCTGTCAGCCCTAAATTATCAACGTGAAGGAATTGCTGCGACAGTCAGCGCTAAAATCtgaggagagaaaaggaagtTTAGGAATAGGTCCAGGATGTTGCTTGTTGGTACGATAGGGCTCTTTTTGAGGGTTAGGTGTAAATAGTGATACAGGCTTTTATATGTGGATACATGTTATGTTTATAGAGAGTaatgtatttaatattaaataagagactttaaagaaaaaaaagaaatgagaacACATTTAGGTTTACCAAGCTAGCTAATATGAATCATGTGGCACAATAATTTTAGGATGAAGTGTATGGGTAgatggctatcttagtgactaccttacctataggccagtgagCCTAGCATCAGTGGTGATAGGTGGTTtgatttgctaataatatgtcaGAATtatattaagacattttaatttatgaaaaaacctttttgacaataatttggaggcccccctgcagtgactctgaggaccccctaggggtcccggaccccctgttgaagatctcagCTCTAACAGATGATTAGGCTGACCTACCTTTCAGATGGTGTAAAGGTGGTCGAAGCTCTCGCTGATCCTTCAATctcaacacacaccaacatgctGTAGTTTAATTTCATATGTTTATGGGAATGCAGATTGTTTATGCAGTGTTGATGAATGTTGATTATTTGTACTGTGATAACTTATTTAGCTTTTGTAAGCCGATACTGTCGAGATCAGTCAATAAATGCTTCTGGTTTTGACTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639779.1 lncRNA upstream 27569 41135950 ~ 41136174 (+) True LOC120562412
TU107662 lncRNA upstream 56017 41068184 ~ 41107726 (+) True G80265
XR_005639774.1 lncRNA upstream 71829 41091477 ~ 41091914 (+) True LOC120562408
TU107680 lncRNA upstream 118351 41044777 ~ 41045392 (+) True G80280
XR_005639784.1 lncRNA upstream 182116 40979110 ~ 40981627 (+) True LOC120562417
TU107725 lncRNA downstream 40675 41215521 ~ 41474414 (+) True G80299
TU107739 lncRNA downstream 138865 41313711 ~ 41347897 (+) True G80306
TU107752 lncRNA downstream 173736 41348582 ~ 41402166 (+) False G80318
TU107758 lncRNA downstream 185613 41360459 ~ 41362553 (+) True G80321
TU107761 lncRNA downstream 187833 41362679 ~ 41363468 (+) True G80322
XM_039806123.1 mRNA upstream 13741 41147864 ~ 41150002 (+) True LOC120562397
XM_039806128.1 mRNA upstream 59960 41102048 ~ 41103783 (+) True LOC120562401
XM_039806126.1 mRNA upstream 151124 41010354 ~ 41012619 (+) False LOC120562400
XM_039806129.1 mRNA upstream 255907 40907328 ~ 40907836 (+) True LOC120562402
XM_039806132.1 mRNA upstream 326665 40830512 ~ 40837078 (+) True LOC120562405
XM_039806134.1 mRNA downstream 1690 41176536 ~ 41186945 (+) True polr3glb
XM_039806101.1 mRNA downstream 45238 41220084 ~ 41294381 (+) True LOC120562388
XM_039806102.1 mRNA downstream 45238 41220084 ~ 41294381 (+) False LOC120562388
XM_039806103.1 mRNA downstream 45238 41220084 ~ 41294381 (+) False LOC120562388
XM_039806106.1 mRNA downstream 64237 41239083 ~ 41319704 (+) True LOC120562390
TU107703 other upstream 49 41156474 ~ 41163694 (+) False polr3glb
XR_005639771.1 other upstream 151124 41007967 ~ 41012619 (+) True LOC120562400
XR_005639770.1 other upstream 507176 40645659 ~ 40656567 (+) True LOC120562387
TU107236 other upstream 743314 40417078 ~ 40420429 (+) False LOC120562499
TU107699 other downstream 1883 41176729 ~ 41182667 (+) False polr3glb
TU107756 other downstream 181634 41356480 ~ 41360206 (+) True G80320
TU107784 other downstream 246510 41421356 ~ 41422578 (+) True G80337
TU107787 other downstream 246510 41421356 ~ 41422578 (+) False G80337
TU107913 other downstream 764652 41939498 ~ 42004616 (+) False G80410

Expression Profile