RNA id: XM_039806123.1


Basic Information

Item Value
RNA id XM_039806123.1
length 797
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC120562397
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41147864 ~ 41150002 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGTCTGAACCTGTAGCTGAATGTTTGCCGTATATGGAGATGATATCGAGCTGTTTGTTTCAGAGACAACCCCTCTCTCGGAGGATATAAGACTGAGaaattatttaatttctctGTCTGAACATTCTTCAGATTTGCATCGTGTCAGAGTTCTgctcttcatcttcatcttcagaCTTTGCAGTTTAGATTTTACATTTCTATATTTTTGGACCTTTGTACCTGAAACTTTCTCCACCAAGTCTTCGATCAACATGAAGATCTCTATCTTTGCTGGTGTTCTGCTGATCTCTGCTGCCGTGCTCTCTGTGGACGGACAAAGTTGGGCTGAGTTTCAAAATAAGCATATCAAAGAGTGGATGACTGCTGGCCAATGTACCCAGGTGATGAGAGCCAAAAGAATTGTGAACCCACCCACACAAGTGAACCCAAGAATCAGCTGCAAGACTTTCAATACCTTCATCATCACCGAGGATGTGAACGCCGTCCGAGCCATCTGTGGTAGAGGAGGAGCGCCATATGGCAACAGTATGAGAATTAGCACAGCTACTTTCCCAATTGTTGACTGTAACCTGGTGAATCAGAATCCACCTGCTGTTCCCTACAACTGTCGGTACAACGGAGTACCTCGTTACAACAGAAGAATTATAGTCAGATGTGAGAACGGAGAACCTGTTCACTTTCATAGAAGtcagtaatctgttactacttgatgaatcagagtaatctgttactacctgatgtatcagagtaatctattactacttgatgaatcagagtaatctgttactacctga

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05133 Pertussis
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639779.1 lncRNA upstream 11690 41135950 ~ 41136174 (+) True LOC120562412
TU107662 lncRNA upstream 40138 41068184 ~ 41107726 (+) True G80265
XR_005639774.1 lncRNA upstream 55950 41091477 ~ 41091914 (+) True LOC120562408
TU107680 lncRNA upstream 102472 41044777 ~ 41045392 (+) True G80280
XR_005639784.1 lncRNA upstream 166237 40979110 ~ 40981627 (+) True LOC120562417
TU107725 lncRNA downstream 65519 41215521 ~ 41474414 (+) True G80299
TU107739 lncRNA downstream 163709 41313711 ~ 41347897 (+) True G80306
TU107752 lncRNA downstream 198580 41348582 ~ 41402166 (+) False G80318
TU107758 lncRNA downstream 210457 41360459 ~ 41362553 (+) True G80321
TU107761 lncRNA downstream 212677 41362679 ~ 41363468 (+) True G80322
XM_039806128.1 mRNA upstream 44081 41102048 ~ 41103783 (+) True LOC120562401
XM_039806126.1 mRNA upstream 135245 41010354 ~ 41012619 (+) False LOC120562400
XM_039806129.1 mRNA upstream 240028 40907328 ~ 40907836 (+) True LOC120562402
XM_039806132.1 mRNA upstream 310786 40830512 ~ 40837078 (+) True LOC120562405
XM_039806209.1 mRNA upstream 487550 40655512 ~ 40660314 (+) True LOC120562500
XM_039806109.1 mRNA downstream 13741 41163743 ~ 41174846 (+) True LOC120562391
XM_039806110.1 mRNA downstream 13741 41163743 ~ 41174846 (+) False LOC120562391
XM_039806111.1 mRNA downstream 13741 41163743 ~ 41174846 (+) False LOC120562391
XM_039806134.1 mRNA downstream 26534 41176536 ~ 41186945 (+) True polr3glb
XM_039806101.1 mRNA downstream 70082 41220084 ~ 41294381 (+) True LOC120562388
XR_005639771.1 other upstream 135245 41007967 ~ 41012619 (+) True LOC120562400
XR_005639770.1 other upstream 491297 40645659 ~ 40656567 (+) True LOC120562387
TU107236 other upstream 727435 40417078 ~ 40420429 (+) False LOC120562499
TU107703 other downstream 6472 41156474 ~ 41163694 (+) False polr3glb
TU107708 other downstream 6472 41156474 ~ 41182667 (+) False polr3glb
TU107699 other downstream 26727 41176729 ~ 41182667 (+) False polr3glb
TU107756 other downstream 206478 41356480 ~ 41360206 (+) True G80320
TU107784 other downstream 271354 41421356 ~ 41422578 (+) True G80337

Expression Profile