RNA id: XR_005639771.1


Basic Information

Item Value
RNA id XR_005639771.1
length 947
RNA type transcript
GC content 0.44
exon number 4
gene id LOC120562400
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41007967 ~ 41012619 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGAActcatctctctcctgtcattcagATCAACATGAAGATCTCTATCTTTGCTGGTgttctgctgctctctgctgctctcatgTTCCTGGGACCAGAAACTGCAGATGCTCTGTCCTTTGATACTAGGCACGTCAACATGAGGGATGACTGCTGCCCAATGTACCAATGTGATGAATGAGGAAAGGAGAAAAATTCAATCAGGGAAAACAAACCCTGCAAGGATACCAATACCTTCTTGAATGGCAGGGAAAAGGTACAGGTGGCTTGTTGGTGACCTAGTTTCCCTCCCTGTCTGCTGGGGAACCTGCAGAAAAGTCTGATATAAAGAGGAGCTCACAAACAAGTGGAGACACTGGATGGTCAAACACAAAGGGATCAACATGAAGATCTCTATCTTTGCTGGTGTTCTGCTGATCTCTGCTGCCGTGCTCTCTGTGGACGGACAAAGTTGGACTAAGTTTGAGCATAAGCATATCAATGCTGGGATGACTGTTGTCCAATGTACCCAGGTTATAAAAGATAGAAAAATCGTGACCCCACCCACCCAAGTGAACCCAAGCAACAGCTGCAAGAGTCTCAATACCTTCATCATCAAAGGAGATGTGAAAGCCATCTGTGCTGTAGGAGGAGGAGACCCATATGGCAACAACGGTATGACAATCAGCAAAGCTACTTTCCCAATTGTTGACTGTAACCTGGTGAAGCAGAATCCACCTGCTGTTCCCTACAACTGTCGGTACAAAGGAGTAGCTCGTAACAACAGAAGAATTATAGTCAGATGTGAACATGGTCTTCCTGTTCACTTACATGGAAGTCAGTAAtatgttactacctgatgaaccagagtaatctgttactacctgatgaatcagagtaatctgttactacctgatgaatcagagtaatctattactacctgatgtatCAGTATAACTTGTGTCTCC

Function

GO: NA

KEGG:

id description
K16631 ANG, RNASE5; angiogenin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639784.1 lncRNA upstream 26340 40979110 ~ 40981627 (+) True LOC120562417
TU107669 lncRNA upstream 40151 40967350 ~ 40967816 (+) True G80271
TU107665 lncRNA upstream 48262 40958368 ~ 40959705 (+) True LOC120562409
XR_005639776.1 lncRNA upstream 48262 40958403 ~ 40959705 (+) False LOC120562409
XR_005639775.1 lncRNA upstream 48262 40958687 ~ 40959705 (+) False LOC120562409
TU107680 lncRNA downstream 32158 41044777 ~ 41045392 (+) True G80280
TU107662 lncRNA downstream 55565 41068184 ~ 41107726 (+) True G80265
XR_005639774.1 lncRNA downstream 78858 41091477 ~ 41091914 (+) True LOC120562408
XR_005639779.1 lncRNA downstream 123331 41135950 ~ 41136174 (+) True LOC120562412
TU107725 lncRNA downstream 202902 41215521 ~ 41474414 (+) True G80299
XM_039806129.1 mRNA upstream 100131 40907328 ~ 40907836 (+) True LOC120562402
XM_039806132.1 mRNA upstream 170889 40830512 ~ 40837078 (+) True LOC120562405
XM_039806209.1 mRNA upstream 347653 40655512 ~ 40660314 (+) True LOC120562500
XM_039806100.1 mRNA upstream 354186 40645659 ~ 40653781 (+) False LOC120562387
XM_039806099.1 mRNA upstream 458552 40510050 ~ 40549415 (+) True LOC120562386
XM_039806128.1 mRNA downstream 89429 41102048 ~ 41103783 (+) True LOC120562401
XM_039806123.1 mRNA downstream 135245 41147864 ~ 41150002 (+) True LOC120562397
XM_039806109.1 mRNA downstream 151124 41163743 ~ 41174846 (+) True LOC120562391
XM_039806110.1 mRNA downstream 151124 41163743 ~ 41174846 (+) False LOC120562391
XM_039806111.1 mRNA downstream 151124 41163743 ~ 41174846 (+) False LOC120562391
XR_005639770.1 other upstream 351400 40645659 ~ 40656567 (+) True LOC120562387
TU107236 other upstream 587538 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other upstream 587538 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other upstream 587538 40419979 ~ 40420429 (+) False LOC120562499
TU107169 other upstream 662907 40334362 ~ 40345060 (+) False LOC120562498
TU107703 other downstream 143855 41156474 ~ 41163694 (+) False polr3glb
TU107708 other downstream 143855 41156474 ~ 41182667 (+) False polr3glb
TU107699 other downstream 164110 41176729 ~ 41182667 (+) False polr3glb
TU107756 other downstream 343861 41356480 ~ 41360206 (+) True G80320
TU107784 other downstream 408737 41421356 ~ 41422578 (+) True G80337

Expression Profile