RNA id: XM_039806128.1


Basic Information

Item Value
RNA id XM_039806128.1
length 717
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC120562401
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41102048 ~ 41103783 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTTCCTACCTGCTTCCTCAAGGTGTAGCTGTCATTCTTACCAGGAAACCAGTTACCTTTCCCTCCAGGCATCGAGTCAACTCTATGGACCGTCTGAAGAAACTTTGCAGCCCATCCTTCCTGCTTCCTCAAGGTGTGTCTGTCATTCATACCAGGAAACCAGTTACCTTTCCCTCCAGATCAACATGAAGATCTCTATCTTTGCTGGTGTTCTGCTGATCTCTGCTGCCGTGCTCTCTGTGGACGGACAAAGTTGGGCTCAGTTTCAAAATAAGCATATCAACCCTGGGATGACTGCTGGCCAATGTACCCAGGTGATAGCAGCCAGAAAAATCGTGAACCCACCCACACTCAATAACCCAAAAATCAGCTGTAAGGGTATCAATACCTTCATCAGCACACAGGATGTGAATGCGGTCCCAGACATCTGTGCTAAGGGAGGAGGAGACCCATATGGCACCAAGGGTATGACAATCAGCAAAGCTAGTTTCCCAATTGTTGACTGTAACCTGGTGAAGCAGAATCCACCTGCTGTTCCCTACAACTGTCGGTATGGTAACGGTGTTCCTTCTACCAAGAAAATTATAGTCAGATGTGAAAACGGTAAACCTGTTCATTTTCATGGAAGtaagtaatctgttactacctgatgaatcagagtaatctgttactacctgatgaatcagagtaatctgttactacctgatgaaccagag

Function

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process
GO:0004518 nuclease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639774.1 lncRNA upstream 10134 41091477 ~ 41091914 (+) True LOC120562408
TU107680 lncRNA upstream 56656 41044777 ~ 41045392 (+) True G80280
XR_005639784.1 lncRNA upstream 120421 40979110 ~ 40981627 (+) True LOC120562417
TU107669 lncRNA upstream 134232 40967350 ~ 40967816 (+) True G80271
TU107665 lncRNA upstream 142343 40958368 ~ 40959705 (+) True LOC120562409
XR_005639779.1 lncRNA downstream 32167 41135950 ~ 41136174 (+) True LOC120562412
TU107725 lncRNA downstream 111738 41215521 ~ 41474414 (+) True G80299
TU107739 lncRNA downstream 209928 41313711 ~ 41347897 (+) True G80306
TU107752 lncRNA downstream 244799 41348582 ~ 41402166 (+) False G80318
TU107758 lncRNA downstream 256676 41360459 ~ 41362553 (+) True G80321
XM_039806126.1 mRNA upstream 89429 41010354 ~ 41012619 (+) False LOC120562400
XM_039806129.1 mRNA upstream 194212 40907328 ~ 40907836 (+) True LOC120562402
XM_039806132.1 mRNA upstream 264970 40830512 ~ 40837078 (+) True LOC120562405
XM_039806209.1 mRNA upstream 441734 40655512 ~ 40660314 (+) True LOC120562500
XM_039806100.1 mRNA upstream 448267 40645659 ~ 40653781 (+) False LOC120562387
XM_039806123.1 mRNA downstream 44081 41147864 ~ 41150002 (+) True LOC120562397
XM_039806109.1 mRNA downstream 59960 41163743 ~ 41174846 (+) True LOC120562391
XM_039806110.1 mRNA downstream 59960 41163743 ~ 41174846 (+) False LOC120562391
XM_039806111.1 mRNA downstream 59960 41163743 ~ 41174846 (+) False LOC120562391
XM_039806134.1 mRNA downstream 72753 41176536 ~ 41186945 (+) True polr3glb
XR_005639771.1 other upstream 89429 41007967 ~ 41012619 (+) True LOC120562400
XR_005639770.1 other upstream 445481 40645659 ~ 40656567 (+) True LOC120562387
TU107236 other upstream 681619 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other upstream 681619 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other upstream 681619 40419979 ~ 40420429 (+) False LOC120562499
TU107703 other downstream 52691 41156474 ~ 41163694 (+) False polr3glb
TU107708 other downstream 52691 41156474 ~ 41182667 (+) False polr3glb
TU107699 other downstream 72946 41176729 ~ 41182667 (+) False polr3glb
TU107756 other downstream 252697 41356480 ~ 41360206 (+) True G80320
TU107784 other downstream 317573 41421356 ~ 41422578 (+) True G80337

Expression Profile