RNA id: XM_039806129.1


Basic Information

Item Value
RNA id XM_039806129.1
length 509
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC120562402
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 40907328 ~ 40907836 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCAACATGAAGATCTCTATCTTTGCTGGTGTTCTGCTGATCTCTGCTGCCGTGCTCTCTGTGGACGGACAAAGTTGGGCTAAGTTTGAGCATAAGCATATCAATGCTGGGATGACTGTTGTCCAATGTACCCAGGTTATAAAAGATAGAAAAATCGTGACCCCACCCACCCAAGTGAACCCAAGCAACAGCTGCAAGAGTCTCAATACCTTCATCATCAAAGGGGATGTGAAAGCCATCTGTGCTGTAGGAGGAGGAGACCCATATGGCACCAACGGTATGACAATCAGCAAAGCTACTTTCCCAATTGTTGACTGTAACCTGGTGAAGCAGAATCCACCTGCTGTTCCCTACAACTGTCAGTACAAAGGAGTAGCTCGTAACAACAGAAGAATTATAGTCAGATGTGAACATGGTCTTCCTGTTCACTTACATGGAAGTCAGTAATCTAATACTACCTGAtgtatcagagtaatctgttactacctgatgtatcagagtaatctgtt

Function

GO: NA

KEGG:

id description
K16631 ANG, RNASE5; angiogenin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639785.1 lncRNA upstream 2367 40904261 ~ 40904961 (+) True LOC120562418
TU107615 lncRNA upstream 31952 40861652 ~ 40875376 (+) False G80237
TU107610 lncRNA upstream 38477 40801396 ~ 40868851 (+) True G80234
TU107614 lncRNA upstream 43966 40861805 ~ 40863362 (+) False G80237
TU107616 lncRNA upstream 43966 40861805 ~ 40863362 (+) True G80237
TU107665 lncRNA downstream 50532 40958368 ~ 40959705 (+) True LOC120562409
XR_005639776.1 lncRNA downstream 50567 40958403 ~ 40959705 (+) False LOC120562409
XR_005639775.1 lncRNA downstream 50851 40958687 ~ 40959705 (+) False LOC120562409
TU107669 lncRNA downstream 59514 40967350 ~ 40967816 (+) True G80271
XR_005639784.1 lncRNA downstream 71274 40979110 ~ 40981627 (+) True LOC120562417
XM_039806132.1 mRNA upstream 70250 40830512 ~ 40837078 (+) True LOC120562405
XM_039806209.1 mRNA upstream 247014 40655512 ~ 40660314 (+) True LOC120562500
XM_039806100.1 mRNA upstream 253547 40645659 ~ 40653781 (+) False LOC120562387
XM_039806099.1 mRNA upstream 357913 40510050 ~ 40549415 (+) True LOC120562386
XM_039806097.1 mRNA upstream 399355 40487603 ~ 40507973 (+) True decr1
XM_039806126.1 mRNA downstream 102518 41010354 ~ 41012619 (+) False LOC120562400
XM_039806128.1 mRNA downstream 194212 41102048 ~ 41103783 (+) True LOC120562401
XM_039806123.1 mRNA downstream 240028 41147864 ~ 41150002 (+) True LOC120562397
XM_039806109.1 mRNA downstream 255907 41163743 ~ 41174846 (+) True LOC120562391
XM_039806110.1 mRNA downstream 255907 41163743 ~ 41174846 (+) False LOC120562391
XR_005639770.1 other upstream 250761 40645659 ~ 40656567 (+) True LOC120562387
TU107236 other upstream 486899 40417078 ~ 40420429 (+) False LOC120562499
TU107237 other upstream 486899 40419869 ~ 40420429 (+) False LOC120562499
TU107235 other upstream 486899 40419979 ~ 40420429 (+) False LOC120562499
TU107169 other upstream 562268 40334362 ~ 40345060 (+) False LOC120562498
XR_005639771.1 other downstream 100131 41007967 ~ 41012619 (+) True LOC120562400
TU107703 other downstream 248638 41156474 ~ 41163694 (+) False polr3glb
TU107708 other downstream 248638 41156474 ~ 41182667 (+) False polr3glb
TU107699 other downstream 268893 41176729 ~ 41182667 (+) False polr3glb
TU107756 other downstream 448644 41356480 ~ 41360206 (+) True G80320

Expression Profile