RNA id: XM_039806131.1


Basic Information

Item Value
RNA id XM_039806131.1
length 474
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC120562404
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41500185 ~ 41501659 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtcattcagATAACCATGAAGATCTCTATCTTTGCCGGttttctgctgctctctctgtgcCAACTGAGCACCGGTGCTAACTTCGGTAGTGTTAGCATTAGGGGGATTGGTGATAATAAGTTTGAACAAGAGAATATCGTGGCTAACCTATGCACCCAGGTGATGATGGACAGAGGATTCGCTTTCCTGAACAAAACCACCTGTAAGCCGGAGAAAACCTTCATCAAAGCTCCAGTGGACGAGGTCCGAGCCGTCTGTGGGGGGAAAGGAAGTGGAGTCAGCAAAGAGAACTTTAAACTGGTTGAGTGTAAAGTTGATCCTGCTCATAACAAGCCTCCCAACTGTCAGTACacggtggaggaggtggagaagaaAATCCTGGTCACCTGTGTCAAAAACCAACCTACtgagtttaaaataaaacagtaatctgttactacctgatgaatcagagtaatctgttactacaactga

Function

GO:

id name namespace
GO:0004518 nuclease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107804 lncRNA upstream 7532 41491844 ~ 41492653 (+) True G80348
TU107800 lncRNA upstream 14116 41484572 ~ 41486069 (+) True G80346
TU107725 lncRNA upstream 25771 41215521 ~ 41474414 (+) True G80299
TU107785 lncRNA upstream 43827 41421959 ~ 41456358 (+) False G80337
TU107790 lncRNA upstream 66638 41433046 ~ 41433547 (+) True G80339
TU107808 lncRNA downstream 686 41502345 ~ 41503240 (+) True G80351
XR_005639788.1 lncRNA downstream 27404 41529063 ~ 41530064 (+) True LOC120562422
XR_005639786.1 lncRNA downstream 37351 41539010 ~ 41539592 (+) True LOC120562420
TU107841 lncRNA downstream 112441 41614100 ~ 41615261 (+) True G80364
TU107842 lncRNA downstream 115250 41616909 ~ 41617366 (+) True G80365
XM_039806104.1 mRNA upstream 112856 41377447 ~ 41387329 (+) True LOC120562389
XM_039806106.1 mRNA upstream 180481 41239083 ~ 41319704 (+) True LOC120562390
XM_039806107.1 mRNA upstream 180481 41239083 ~ 41319704 (+) False LOC120562390
XM_039806101.1 mRNA upstream 205804 41220084 ~ 41294381 (+) True LOC120562388
XM_039806120.1 mRNA downstream 39431 41541090 ~ 41545594 (+) False LOC120562396
XM_039806122.1 mRNA downstream 40271 41541930 ~ 41545594 (+) True LOC120562396
XM_039806117.1 mRNA downstream 40271 41541930 ~ 41545594 (+) False LOC120562396
XM_039806115.1 mRNA downstream 40271 41541930 ~ 41545594 (+) False LOC120562396
XM_039806118.1 mRNA downstream 40271 41541930 ~ 41545594 (+) False LOC120562396
TU107784 other upstream 77607 41421356 ~ 41422578 (+) True G80337
TU107787 other upstream 77607 41421356 ~ 41422578 (+) False G80337
TU107756 other upstream 139979 41356480 ~ 41360206 (+) True G80320
TU107708 other upstream 317518 41156474 ~ 41182667 (+) False polr3glb
TU107699 other upstream 317518 41176729 ~ 41182667 (+) False polr3glb
TU107913 other downstream 437839 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 501714 42003373 ~ 42006594 (+) True G80410
TU108350 other downstream 983676 42485335 ~ 42486009 (+) True G80682
XR_005639823.1 other downstream 1031265 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other downstream 1031761 42533420 ~ 42538282 (+) False LOC120562757

Expression Profile