RNA id: XM_039806133.1


Basic Information

Item Value
RNA id XM_039806133.1
length 4408
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC120562406
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 41551091 ~ 41576503 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cccccccggacgccccggacagtacgtaaaaagtggacatgtccgggcaaaagaggacgtttggtcaccctagaTAAAGTGATGAGAAAAGGCCCTCAGTAGTTCAGTCATGTTTTCTAACTACCCATTTAGTCTGAGCAAAAGTCCAACAAGCCAAAAGGATTCAACTGACACTGATATGACACAGAGAGAAGCAGCCAATCCGAGGACGAGCTGCTGatatttggctttttttccGGGAGAAATGATGTGAGGGATGAATGAGTGATGATGTGCTAATGAATGATTGGACTACTGctctcagtgtttcctctccaGATGAAGGTGTGGACTCTGCTATGAGTCAgtgtgaggacagagaggagggagccCCTCCCTCTAAAACCACTCTGTGTGGGGAACATGACAGCCAGACCAAAGCTCAAAGCCCAGAGAAGCAGCACAGACCTgcacctggacctggacctaCACCTGAACATGgacctggtcctggtcctggtcctggtcctggtcctggacTTGGACCTGGAACTggacccagctgtgtgtcctttaaGAGTGACCGATTTATGGGTCATATTATAGACTTCAAAGATGGACGCCACTCTGTAGATCAAAGcACAGAGAAGCAGCATAGACCTGGACCTCGACCTTCACCTGGACCTGGACCCGGACCCAGATCCGGACCCAGATCCGGACCCGGACCAGGACCTGGACTTGGACCTggacccagctgtgtgtccttcaagAGTGACCGGTCGAAGGATGATTTTTTGATTAATTTTAAACAACAACATGACCAAAAagtggaccaggagagctcagaggttcccagtggtcagtcggcccagcagcatcaaacacacctggactccatatttatgctgctaGAGGAGGACATTGTCACTTTTGTGAAGAAAgagctgaagaagatccagaaggttctaagtccagattacccagaatgcttCGAGAGTCAGATGGAGGATGTGGAGATGTTGGATGGTAAGGATGAAGAGCAGAGgtggagcagcagagaggcatttcggaagatcacactgcacttcctgaggagaatgaagcaggagGAGCTGGCTGACCGTCTGCAGAGCAGAAGTCCTGCTGCAGTTGGTAAGCGTAAACTCAAATCTAAGCTGCAGaagaagttccagtgtgtgtttgaggggattgctaaagcacGAAACACAACCGTTCTGAaccagatgttcacagagatctacatcgcagagggagggactgcagaggtcaatgatgaacatgaggtcagacagattgaaacagcatccagaaaaccagacagaccagaaacaataatcagacgagaagacatctttaaagcaTCACCTGGAAGAggtgaaccaatcagaacagtgatgacaaggggagtggctggcatcgggaaaacagtcttaacacagaagttcactctcgactgggctgaagacaaaACCAACCAAGACATCCAGTTTACATTTCCATTCactttcagagagctgaatgtgctgaaagagaaaaagtacagcttggtTGAACTTGTTGATCgcttctttagtgaaaccaaagaagcaggaatctgcaggtttgaagagttcccggttgtgttcatctttgacggtctggatgagtgtcgacttcctctggacttcctcaacactgagatcctgactgatgttacagagtccacctcagtgggtgtgctgctgacaaacctcatcagggggaatctgcttccctctgctcgcctctggataaccacacgacctgcagcagccaatcagatccctcctgagtgtgttgacatggtgacagaggtcagagggttcactgacccacagaaggaggagtacttcaggaagagattcagagatgaggagcaggccagcagaatcatctcccacatcaagacatcacgaagcctccacatcatgtgccacatcccagtcttctgctggatcactgctacagttctagAGGATGTGTTGCAAACCACAGAGCGAGGAgggctgcccaagaccctgactgagatgtacatccatttcctggtggttcagtccaaagtgaagaaagtcaagtatgatggaggagctgagattgatccacactggagtccagagagcaggaagatgatggagtctctgggaaaactggcttttgaggagctgcagaaaggcaacctgatcttctatgaatcagacctgatagagtgtggcatcgatttcacagcagcctcagtgtactcaggagtgttcacgCAGATccttaaagaggagagaggactgtaccaggacaaggtgttctgcttcgtccatctgagtgttcaggagtttctggctgctcttcatgtccatatgacattcatcaactctggagtcaacctgctgtcagaaGAACTAACAACATCCTGGTGGCCTAAAGAGATCAGAGACAAACCAACACAtttctaccagagtgctgtgaacaaggccttacagagtccaaatggacacctggacttgttccttcgcttcctcctgggtctttcactgcagaccaatcagacTCTTCTACAAGGTTTGCTGACACAGATAGGAAGTAgctcactgaccaatcagaaaacagttgagtacatcaagaagaagatcagtgagaatctttctgcagagagaagcatcaatctgtttcactgtctgaatgaactgaatgatcatTCTCTAGTGGAGCAGATCCAACAGTCCCTGAGATCAGGATGTCTCTCCGCAGATAAAATGTCTCCTGcgcagtggtcagctctggccTTCATCTTGCTGTCATTAGAAAAAgatctggacgtgtttgacctgaagaaatactcagcttcagaggaggctcttctgaggctgctgcctGTTGTCAAAGcatccaacaaagctctgctgagtggctgtaacctgtcagagagaagctgtgaaggtCTGTCCTCaattctcagctcccagtcctctagccTGAGAGAGCTGGATGTGAGTAACAAcgagctgcaggattcaggagtgaagcagctgtcggctggactgaagagtccacactgcagactggaaactctcaAgctgagtggctgtaacctgtcagagagaagctgtgaagttCTGGcttcagttctcagctcccagtcctctagtctgagagagctggacctgagtaacaacgagctgcaggattcaggCGTGAAGCAGCTGTCGGCTGGACTGAAGAGcccacactgcagactggacactctcagtctgtcaggctgtctggtctcagaggaaggctgtacttctctggcctcagctctgagctccaacccctcccagCTGAGagtgctggacctgagctacaatcatccaggagactcaggagtgaagctgctgtcAGCTGGACTTAAGGATCCAAactggagactggacactctcagGATGGATCATGGTGGACAACAGAGACTGAGACCTGGTGTgaggaagtaTGTCTGTGAATTggaactggacacaaacacagtaaacatatacctcaaactgtctgacaacaacaggaaggtgacacatGCGGGAGAGGATCAGTcgtatcctgatcatccagacagATTTGACTCCTttcctcagctgctgtgtagaaatggtctgactggtcgctgttactgggaggtcgagaggagaggagaggttcatatatcagtgagttacagagaaATCAGAAGGAAAGGAGGCAGTAATGACTGTTGGCTTGGAGGGAAttatcagtcctggagtctgatgaGCAATGATGATGGTAACTCTGTCTGGCACAATAACAGAGTAACAGACCTcacttcctcctctgtctctaacagagtagcagtgtatgtggactgtcctgctggcactctgtccttctacacagtctcatctgactcactgatccacctccacaccttcaacaccacattcactcaaccTCTTTATCCTGGATTTGGGCTCTGGTCAGAtagttcctcagtgtctctttGTCCTCTGCAGGACTGAGAGTCTCTCCTGTGGACAGAAACTTACTGAAGATCAGTTGCTgttcaccatcacacacactctgcatgGTGAAGCACATCTGTCTCAGACTCAAACACTAAACATTCATTTGTCTGATTTCATCTCTTTGATTATcaacatttaaactgtttaacTAGAAACACTTTATGATTCCTGTCATCAGCTGCCTCTCTTTACCTGAGGATACACTGTATAAAGCTGAGTGAATGTGATGTTACTTTACGTTTTTGGTAAATCTGTGTCCATGGTTACAAGCTGTACCAAGAGCTTCTCTGATCAGATGTGTGTTGTAATAAACCTTTATATTCAAGTCAGAACAACTGAGGCTCTGAGGCTGAGACTAAAATATTAAACTTAAAGTCTGAAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639786.1 lncRNA upstream 11499 41539010 ~ 41539592 (+) True LOC120562420
XR_005639788.1 lncRNA upstream 21027 41529063 ~ 41530064 (+) True LOC120562422
TU107808 lncRNA upstream 47851 41502345 ~ 41503240 (+) True G80351
TU107804 lncRNA upstream 58438 41491844 ~ 41492653 (+) True G80348
TU107800 lncRNA upstream 65022 41484572 ~ 41486069 (+) True G80346
TU107841 lncRNA downstream 37597 41614100 ~ 41615261 (+) True G80364
TU107842 lncRNA downstream 40406 41616909 ~ 41617366 (+) True G80365
TU107834 lncRNA downstream 61635 41638138 ~ 41680108 (+) False G80363
TU107836 lncRNA downstream 61635 41638138 ~ 41696795 (+) False G80363
TU107839 lncRNA downstream 61635 41638138 ~ 41638883 (+) False G80363
XM_039806120.1 mRNA upstream 5497 41541090 ~ 41545594 (+) False LOC120562396
XM_039806122.1 mRNA upstream 5497 41541930 ~ 41545594 (+) True LOC120562396
XM_039806117.1 mRNA upstream 5497 41541930 ~ 41545594 (+) False LOC120562396
XM_039806115.1 mRNA upstream 5497 41541930 ~ 41545594 (+) False LOC120562396
XM_039806118.1 mRNA upstream 5497 41541930 ~ 41545594 (+) False LOC120562396
XM_039804729.1 mRNA downstream 105910 41682413 ~ 41693005 (+) True LOC120561589
XM_039804730.1 mRNA downstream 108274 41684777 ~ 41688729 (+) False LOC120561589
XM_039804732.1 mRNA downstream 112008 41688511 ~ 41693005 (+) False LOC120561589
XM_039804728.1 mRNA downstream 151063 41727566 ~ 41850702 (+) True LOC120561585
XM_039806643.1 mRNA downstream 950993 42527496 ~ 42529482 (+) True LOC120562755
TU107784 other upstream 128513 41421356 ~ 41422578 (+) True G80337
TU107787 other upstream 128513 41421356 ~ 41422578 (+) False G80337
TU107756 other upstream 190885 41356480 ~ 41360206 (+) True G80320
TU107708 other upstream 368424 41156474 ~ 41182667 (+) False polr3glb
TU107913 other downstream 362995 41939498 ~ 42004616 (+) False G80410
TU107914 other downstream 426870 42003373 ~ 42006594 (+) True G80410
TU108350 other downstream 908832 42485335 ~ 42486009 (+) True G80682
XR_005639823.1 other downstream 956421 42532924 ~ 42538282 (+) False LOC120562757
XR_005639822.1 other downstream 956917 42533420 ~ 42538282 (+) False LOC120562757

Expression Profile