RNA id: XM_039806165.1


Basic Information

Item Value
RNA id XM_039806165.1
length 2029
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC120562452
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35554223 ~ 35565907 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGCACATCCGACGGAGAGTTGAGTGCTTCAACACCGACATCCATCTGCAGAGCTCCATCCACCTGCTGCTACACCTGAACACCACACGGTCTCCGCCACTTTACTGCTGCTACTTCATCATGTTGAAGCCCGTTGCATTGCTCCTCCTGCTGGCAGGTGTGGTCCACACTGTGCCCCACCCTGTGTGCACTGTGACTGCCTCCACCGTCATCGATTTCTTCAACAGAATCCGGTCGGTCCCGGATCGCTGTACATACACACTGACAGGAGATGACACTATTGAACTATTGGCGAGTTTCCGGGAGCGAAGCCGTACAGATGTGCCATTTTTGGACGCCTTGACAATAACTGCGGCAGGTTTAACAATCTATCTTGGACAAGGGGGGATAGTTCAGGTTAATGGCCAAACACTAACGCTCAACGCCACGGCTCAGCTGATTAGCTTTGCGGAGTTCTCCAAGGACCAGACTGGAGCCACTGTCCAGATTGGTTCTTCGCTCACAATCTCTTTTGATGGCAACACTGCAGTAATCACAGGAGTTGATGCAGCTGCAGAAGGCTTGTGTGGTAACCCCATCAACGCCAGTCAGACCTTCAATCTGGCTGAAGAGAAGTCTTCCTCCAGTGTGTTTGGCTGCGAGGTCCTGTACAGCGACACCCCCAACAATACGACCAACTGCAACCTTACAACTGAACACTGTAATCTCCTGATGCAGGCACCCTTCACCGATTGCCAAGTTGACCCAGCTCCCTACATAACCGCCTGCGCAGAAACTTCGTGCAAATTCCCGACCGAGGAAGGCCTCGCTCTCAGCTGCCAGTTTTTGGACGCTTACGCCAAGACCTGCGGTCTGAACACCAACATCACACTGGGCGACTGGAGGTCACTTGCCGATTGCCctgtcCCTCAGGTCTCCTGTACGGAGCTGTACTGCAGTGATAACGAGTACTGCGACGGGAACAACGGTGAACCCCAATGCCTCTGTCGGGCTCTTTTTGCCGCCAAGTACACACCAACAAACTCTTTAGGCGACCCGACAGTCTGCATGGGGAGCTCAGCCACTCTTACTCTGGCTGGATGTCTGCTCAGCGCCAAAAACATCGACTACACCACCTTACGCCTCCTAGACGAAAGCTGCGTAGGACACATGGACAGCGAGACCCACATGGTGACTTTCAGCTTTGACAGCAGCAACACCTGTGGGACCGAGATCATGAACAACGGAAGCCAAATCATCTACCAGAACGCCATCACGATGCAGAACAGCTCCACGGACGTCATCACCCGCCACGACCAAGTCAGCATCGACTTCTCCTGCTTGTACACAGTGCCAGACCTCACGAGTGTGTCCTTCAAAATcaaagagagctCCGTGGTGGAGGAGATTGTATCTGGAATTTGGAATTACACTCTGATGATGAAAGCGTACACCGACAACGAGTTTGTGAACCTTGTCGGGCCGGACACTGAGCTGGTACTGGACCAGAAGGTCTGGGTGGAGCTGATGACGGAGGGGCTGGACAACAACATGGTCTCCATAGTGACCGACTCCTGCTGGGCGACCAACCAGCCGTCACCAAATGCAAGTCTGCGATACGACCTCGTCATCAACGGATGCCCAAACCCTGCTGACCAGACGGTGAGTGTGCAGGGAAACGGACTGGGAACATTCAACGTCTTCTCTTTCAACATGTTCCAGTTCTCTGGGAAAGCTGGCGACATCTACCTGCACTGCCAACTGGAGCTGTGCCCCAAACACGGCAACTCCTGCGCTCAGATCTGCAGCAGAGGTGGCAGGAGGCGCagatcactaaggtctaaaaGAGCAGATGAAAACCCAGCTCTCATCACTATGGCCTGGAATAATTAAAGACAGCTCTCCTTTTTGATCGATTACATGTTTTGTCTGGTTGTCTCCTCAGATGGTTCCTGACTTAAGCTTCGTCCCCATAAAGAGCCTGAGATGTCACTGAGCATCTGAAAGTTGATCGTTGCTGTAAAACAAATGCTTCGATCCACCTGAGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105127 lncRNA downstream 22433 35525073 ~ 35531790 (-) True G78620
TU105128 lncRNA downstream 22433 35525073 ~ 35531790 (-) False G78620
TU105144 lncRNA downstream 37289 35498361 ~ 35516934 (-) False G78631
TU105142 lncRNA downstream 37289 35498405 ~ 35516934 (-) False G78631
TU105143 lncRNA downstream 37289 35498405 ~ 35516934 (-) False G78631
TU105229 lncRNA upstream 55791 35621698 ~ 35625221 (-) True G78680
TU105247 lncRNA upstream 167759 35733666 ~ 35734165 (-) True G78690
TU105248 lncRNA upstream 175223 35741130 ~ 35741410 (-) True G78691
TU105261 lncRNA upstream 255378 35821285 ~ 35821651 (-) False G78698
TU105262 lncRNA upstream 255378 35821285 ~ 35821651 (-) True G78698
XM_039807233.1 mRNA downstream 105925 35409322 ~ 35448298 (-) True ndufaf6
XM_039807234.1 mRNA downstream 105926 35409322 ~ 35448297 (-) False ndufaf6
XM_039807235.1 mRNA downstream 106201 35409322 ~ 35448022 (-) False ndufaf6
XM_039806807.1 mRNA downstream 244826 35268357 ~ 35309397 (-) False plekhf2
XM_039806808.1 mRNA downstream 264588 35268357 ~ 35289635 (-) True plekhf2
XM_039805925.1 mRNA upstream 12802 35578709 ~ 35819797 (-) True si:dkey-22o22.2
XM_039806166.1 mRNA upstream 269195 35835102 ~ 35842232 (-) True LOC120562453
XM_039807237.1 mRNA upstream 367127 35933034 ~ 35938978 (-) True LOC120563121
XM_039807236.1 mRNA upstream 380476 35946383 ~ 35950158 (-) True LOC120563120
XM_039804947.1 mRNA upstream 428745 35994652 ~ 35997771 (-) True LOC120561730
XR_005639861.1 other downstream 244826 35300967 ~ 35309397 (-) False plekhf2
TU104958 other downstream 376984 35173866 ~ 35177239 (-) True G78496
unassigned_transcript_360 other downstream 418062 35136090 ~ 35136161 (-) True trnap-cgg_2
unassigned_transcript_359 other downstream 419161 35134991 ~ 35135062 (-) True trnap-ugg_1
unassigned_transcript_358 other downstream 420488 35133664 ~ 35133735 (-) True trnap-agg_6
TU105304 other upstream 458824 36024731 ~ 36026542 (-) True G78733
TU105756 other upstream 537090 36102997 ~ 36105675 (-) True G79034
TU105798 other upstream 783322 36349229 ~ 36359580 (-) False creb3l4
TU105799 other upstream 783322 36349229 ~ 36359580 (-) False creb3l4
TU105912 other upstream 1098635 36664542 ~ 36748224 (-) False LOC120563186

Expression Profile