RNA id: XM_039806167.1


Basic Information

Item Value
RNA id XM_039806167.1
length 863
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC120562454
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 35875127 ~ 35883935 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTTCAGGATGAACAGAAATCCACAGGAGGAAAATGAGGATATCGAGGAAGCAGCTAACTATGTTAATGTTTCAGCATGCACTGTGGAGAAAATGGCAGCTCGTCCAGACCAGAGgtttctctgcttctctcagTATTTTCCACCGATAGCAGTGTGTTGGCTGATACTGTTGGTCATCATGGGGCTGCGTATCCACTttaCCAATCGCAACCTCAACGACAAATTCAGCGTCTTAGAAAACCCGATCATAGACCTGACTGCAGTAAACCAGGAGCTGGAGACACGAAACCAGGAGCTGAAGACGGAGAGAAACAAGTTAAGAggacaaatacaaaacatcagTCGAGCTCAGTGGAGCATTGATGAATACTGCCCCAAAGTAAATAACGAGAGACGGTGTAGAGATTGTCAGGAGAGCTGGAGATTCGTCATCAAGTCTAGCTGCTATGTGATCAATGACGTTTATCCTCCTGATCAGAAAACCTGGGAAGAAGCTCGAGAAGACTGCAGAGCACGGGGATCAGATTTGGTTGttgtagatgatgaagatgaaaagAATGCACTCCGTCGTTACAGCCGGTACGGATCCTGGATTGGCCTGAGAGCTGAAGGAGGGAGATGGAAGTGGATCGATGGAAGTGATCTGACTGAAAGTGTCACCTACTGGATAGATGAACCACCACCTCCTACTGATGATTGatgagagggacagacagactgctcagcttcctgtttcctgtgtgaCAGGTTATATTGTTGCTACTCATGAGCCAAAATGGAGACACAGCatcacttgtttttcttcagcaTTTAATGTAAATCATATTAATATGTAGAGTGTTTAATCTATCTAGAAGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105215 lncRNA upstream 53486 35821290 ~ 35821641 (+) True G78674
TU105210 lncRNA upstream 61520 35775272 ~ 35813607 (+) True G78669
TU105209 lncRNA upstream 61520 35783426 ~ 35813607 (+) False G78669
TU105208 lncRNA upstream 91464 35783426 ~ 35783663 (+) False G78669
TU105202 lncRNA upstream 121825 35743295 ~ 35753302 (+) False LOC120562275
TU105270 lncRNA downstream 24091 35908026 ~ 35908235 (+) True G78705
TU105271 lncRNA downstream 24885 35908820 ~ 35909069 (+) True G78706
TU105272 lncRNA downstream 44505 35928440 ~ 35928896 (+) True G78707
TU105281 lncRNA downstream 78838 35962773 ~ 35963505 (+) True G78716
TU105307 lncRNA downstream 150413 36034348 ~ 36034652 (+) True G78736
XM_039805923.1 mRNA upstream 2883 35865849 ~ 35872244 (+) True LOC120562279
XM_039805924.1 mRNA upstream 2883 35865849 ~ 35872244 (+) False LOC120562279
XM_039805922.1 mRNA upstream 18391 35849473 ~ 35856736 (+) True LOC120562277
XM_039805920.1 mRNA upstream 101848 35761813 ~ 35773279 (+) False LOC120562275
XM_039805919.1 mRNA upstream 101848 35764890 ~ 35773279 (+) True LOC120562275
XM_039805921.1 mRNA downstream 12415 35896350 ~ 35900892 (+) True LOC120562276
XM_039807298.1 mRNA downstream 140691 36024626 ~ 36026571 (+) True LOC120563160
XM_039807323.1 mRNA downstream 208264 36092199 ~ 36110132 (+) True dek
XM_039807327.1 mRNA downstream 227115 36111050 ~ 36129242 (+) False LOC120563175
XM_039807328.1 mRNA downstream 228148 36112083 ~ 36129242 (+) False LOC120563175
TU105077 other upstream 466445 35405375 ~ 35408682 (+) True G78594
unassigned_transcript_361 other upstream 686928 35188118 ~ 35188199 (+) True trnas-aga_7
TU104752 other upstream 1018595 34839157 ~ 34856532 (+) False LOC120562567
TU104540 other upstream 1330748 34529355 ~ 34544379 (+) False G78200
TU104420 other upstream 1839160 33990595 ~ 34035967 (+) False sh3bp5b
TU105334 other downstream 253824 36137759 ~ 36141222 (+) False G78759
TU105369 other downstream 410052 36293987 ~ 36350995 (+) True G78772
TU105393 other downstream 508317 36392252 ~ 36434225 (+) False LOC120563181
TU105394 other downstream 508317 36392252 ~ 36465230 (+) False LOC120563181
TU105437 other downstream 807458 36691393 ~ 36703865 (+) True LOC120562457

Expression Profile