RNA id: XM_039806178.1


Basic Information

Item Value
RNA id XM_039806178.1
length 751
RNA type mRNA
GC content 0.66
exon number 2
gene id rpp25l
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 37524501 ~ 37529217 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tacttcctccacacAGGAGTGAAGAAGCTGCCGGCCTTCACGACAGTTCTCATCGTGTTACGGTAACGTAAAGTGTCGCAGCAGAAGTAAACATGTGGAGAGTTCAGTAGCCAAATAACAAAAACACCTGatgGAGAACTACAGTAAAGCTCGGACGGTGGAGCAGCCCTGCGTCTGTCCGTTCCCCGGCCTCCCCCCCGACACGCCGGAGGTCCGCGTCAGAGACGGCAGCAAGATCCGCAACCTGCTGCGTTACGCTCTGAGCCGCGTGGAGGCCAAACCGCGGCCCGCGCCCACGCCCGAGGCCGGGACCGTGGCTGCCGAGGGACAAccggaagcagcagcagcagcagcagcagcagcggcggcagCGGGCCGGCCGCTCTGCAAACACGTCGTCTTCACGGCGACCGGGAAAGGCGTGTCCAAGGCGGTCACGTGCGTGGAGATCGTGAAGCGGCGCGTGAAGGGGCTGCACCAGCTCACGCGGCTGCTGTTCAGCCGCGTGGACGAGGTGTGGGAGCCGCTGGAGCCCGCCGCGGGCCTCGACAGCCTCACGGTCAGCAGGAACGTGCCCGCCATCTGGATCCTGCTCTGCAGGGAGCCGCTGGACGCCAGCCAGCCCGGGTACCAGGCGCCGGGCTGCTACGACGCCCTGTGGGCTCAGGCAGCCAGCAGGGAGGAGGCAGCAGCGGGGCTCAGCCGACAGAGACTGGGACACAAGAGgaagaagggaggaggaggaggagga

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14525 RPP25; ribonucleases P/MRP protein subunit RPP25

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106035 lncRNA downstream 22948 37501357 ~ 37501553 (-) False LOC120561551
TU106033 lncRNA downstream 30361 37492939 ~ 37494140 (-) False LOC120561551
TU106074 lncRNA downstream 33038 37491056 ~ 37491463 (-) True G79239
XR_005639705.1 lncRNA downstream 76994 37444299 ~ 37447507 (-) True LOC120562173
TU106072 lncRNA downstream 91822 37431791 ~ 37432679 (-) True G79237
TU106082 lncRNA upstream 4010 37533227 ~ 37533485 (-) True G79246
TU106334 lncRNA upstream 129315 37658532 ~ 37659319 (-) True G79419
TU106346 lncRNA upstream 202554 37731771 ~ 37732474 (-) True G79431
TU106362 lncRNA upstream 228984 37758201 ~ 37758821 (-) True G79441
TU106359 lncRNA upstream 241488 37770705 ~ 37772596 (-) False LOC120562472
XM_039804681.1 mRNA downstream 5112 37492800 ~ 37519389 (-) False LOC120561551
XM_039804680.1 mRNA downstream 5112 37492800 ~ 37519389 (-) True LOC120561551
XM_039806351.1 mRNA downstream 208897 37249361 ~ 37315604 (-) True LOC120562575
XM_039806349.1 mRNA downstream 289372 37088824 ~ 37235129 (-) True LOC120562574
XM_039806175.1 mRNA downstream 497750 36928064 ~ 37026751 (-) True col6a4a
XM_039806854.1 mRNA upstream 3748 37532965 ~ 37553789 (-) False LOC120562909
XM_039806853.1 mRNA upstream 3748 37532965 ~ 37553789 (-) False LOC120562909
XM_039806852.1 mRNA upstream 3748 37532965 ~ 37553789 (-) True LOC120562909
XM_039806180.1 mRNA upstream 63543 37592760 ~ 37599647 (-) True LOC120562466
XM_039804913.1 mRNA upstream 100490 37629707 ~ 37632079 (-) True LOC120561711
XR_005639615.1 other downstream 5107 37495662 ~ 37519394 (-) False LOC120561551
TU105962 other downstream 318235 37107983 ~ 37206266 (-) False LOC120562574
TU105912 other downstream 776277 36664542 ~ 36748224 (-) False LOC120563186
TU105798 other downstream 1164921 36349229 ~ 36359580 (-) False creb3l4
TU105799 other downstream 1164921 36349229 ~ 36359580 (-) False creb3l4
TU106375 other upstream 254614 37783831 ~ 37793780 (-) False LOC120562472
TU106409 other upstream 441270 37970487 ~ 37971348 (-) False LOC120562474
TU106430 other upstream 551666 38080883 ~ 38190801 (-) False G79484
TU106471 other upstream 611252 38140469 ~ 38205182 (-) False LOC120562477
TU106470 other upstream 672034 38201251 ~ 38205182 (-) True LOC120562477

Expression Profile