RNA id: XM_039806180.1



Basic Information


Item Value
RNA id XM_039806180.1
length 789
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC120562466
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 37592760 ~ 37599647 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ACTTCTACTGAGAGAGAACAGCTACAGGAAGGAGTTCTGGGACTTCAACCAGCTGCTGAAACCACAAACTGAACAGACTAAATGGCTTCCAGATCAGAGGAGGATCTCTGCTGTCCGGTCTGTCATGAAGTCTTCAGAGATCCTGTTGTTCTGTTGTGTAGCCACAGCTTTTGTGAAGACTGTCTGCATGGCGgctggagagagaaacagacacaggaGTGTCCAGTTTGTAGGAAAAGATCCTTGTCTAAACCACATGTTAACCTGGTGTTGAAGAACCTGTGTGAGGCCTTCATACAGGAGAGAGATCAGAGATCTTCAGAGGCTCTCTGCTgtctgcactctgagaaactcaaactcttctgtctggatcatcagcagccagtgtgtgttgtctgcagAGATTCAGAAACCCACACCAACCACAGATTCAGACCCATCGAAGAAGCTGCACGACAACACAAGAAGGAACTTCAGGAAACTCTGGAGCCCTTAAAGGAGAAGCTAGAGGTTTTTGAACGAGTAAAAGTGGAGTGTGATAAAACAGCAAAACATATAAAGGCCCAGGCCCGacgcacagagacagagattaAGGATCAGTTTAAGAAGCTTCACCAGTTTCTAGAAAATGAAGAGGAGGCCAGAATGGCTGCACTgacggaggaagaggagcagaagagtctGAATCCAGACACCGATCCCGAGCCGACACGCCGGCCCGAGGATCCCGGAAAGTGGACTCTGGACTGGGACGGAGGAAAGCTGTGGTTCTATGATCTTTtgtactaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU106076 lncRNA downstream 42519 37516756 ~ 37550241 (-) True G79241
TU106082 lncRNA downstream 59275 37533227 ~ 37533485 (-) True G79246
TU106079 lncRNA downstream 62155 37525640 ~ 37530605 (-) True G79243
TU106080 lncRNA downstream 65513 37526905 ~ 37527247 (-) True G79244
TU106035 lncRNA downstream 91207 37501357 ~ 37501553 (-) False LOC120561551
TU106334 lncRNA upstream 58885 37658532 ~ 37659319 (-) True G79419
TU106346 lncRNA upstream 132124 37731771 ~ 37732474 (-) True G79431
TU106362 lncRNA upstream 158554 37758201 ~ 37758821 (-) True G79441
TU106359 lncRNA upstream 171058 37770705 ~ 37772596 (-) False LOC120562472
TU106371 lncRNA upstream 179717 37779364 ~ 37796337 (-) False G79443
XM_039806854.1 mRNA downstream 38971 37532965 ~ 37553789 (-) False LOC120562909
XM_039806853.1 mRNA downstream 38971 37532965 ~ 37553789 (-) False LOC120562909
XM_039806852.1 mRNA downstream 38971 37532965 ~ 37553789 (-) True LOC120562909
XM_039806178.1 mRNA downstream 63543 37524501 ~ 37529217 (-) True rpp25l
XM_039804681.1 mRNA downstream 73371 37492800 ~ 37519389 (-) False LOC120561551
XM_039804913.1 mRNA upstream 30060 37629707 ~ 37632079 (-) True LOC120561711
XM_039806181.1 mRNA upstream 40392 37640039 ~ 37642891 (-) True LOC120562467
XM_039806909.1 mRNA upstream 73174 37672821 ~ 37675013 (-) True LOC120562949
XM_039806908.1 mRNA upstream 82588 37682235 ~ 37685613 (-) True LOC120562948
XM_039806182.1 mRNA upstream 94070 37693717 ~ 37695406 (-) True LOC120562468
XR_005639615.1 other downstream 73366 37495662 ~ 37519394 (-) False LOC120561551
TU105962 other downstream 386494 37107983 ~ 37206266 (-) False LOC120562574
TU105912 other downstream 844536 36664542 ~ 36748224 (-) False LOC120563186
TU105798 other downstream 1233180 36349229 ~ 36359580 (-) False creb3l4
TU106375 other upstream 184184 37783831 ~ 37793780 (-) False LOC120562472
TU106409 other upstream 370840 37970487 ~ 37971348 (-) False LOC120562474
TU106430 other upstream 481236 38080883 ~ 38190801 (-) False G79484
TU106471 other upstream 540822 38140469 ~ 38205182 (-) False LOC120562477
TU106470 other upstream 601604 38201251 ~ 38205182 (-) True LOC120562477

Expression Profile